Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH44_RS19480 Genome accession   NZ_AP028908
Coordinates   4286977..4288503 (+) Length   508 a.a.
NCBI ID   WP_261849833.1    Uniprot ID   A0AAN0MNM5
Organism   Pectobacterium araliae strain MAFF 302110     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4281977..4293503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH44_RS19460 (PEC302110_38070) - 4283416..4284342 (-) 927 WP_095700894.1 branched-chain amino acid transaminase -
  AACH44_RS19465 (PEC302110_38080) ilvM 4284368..4284628 (-) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  AACH44_RS19470 (PEC302110_38090) ilvG 4284686..4286332 (-) 1647 WP_261849834.1 acetolactate synthase 2 catalytic subunit -
  AACH44_RS19475 ilvL 4286473..4286571 (-) 99 WP_071531109.1 ilv operon leader peptide -
  AACH44_RS19480 (PEC302110_38100) comM 4286977..4288503 (+) 1527 WP_261849833.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH44_RS19485 (PEC302110_38110) - 4288561..4288899 (-) 339 WP_261849832.1 DUF413 domain-containing protein -
  AACH44_RS19490 (PEC302110_38120) hdfR 4289020..4289847 (+) 828 WP_261849831.1 HTH-type transcriptional regulator HdfR -
  AACH44_RS19495 (PEC302110_38130) yjfF 4289870..4290832 (-) 963 WP_261849830.1 galactofuranose ABC transporter, permease protein YjfF -
  AACH44_RS19500 (PEC302110_38140) ytfT 4290832..4291842 (-) 1011 WP_261849829.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  AACH44_RS19505 (PEC302110_38150) ytfR 4291829..4293349 (-) 1521 WP_261849828.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55387.06 Da        Isoelectric Point: 7.3091

>NTDB_id=107289 AACH44_RS19480 WP_261849833.1 4286977..4288503(+) (comM) [Pectobacterium araliae strain MAFF 302110]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLRGEGELPSCSTITPVIQAGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
NEEALESAAINSLVNIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGENSATIRERVLIARQIQLKRANKINALLTSREIEKHCALEAPDAAYLEDVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=107289 AACH44_RS19480 WP_261849833.1 4286977..4288503(+) (comM) [Pectobacterium araliae strain MAFF 302110]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTACATCGAAGTTCACATCAGCAG
CGGGTTACCCGCTTTAACGCTGGTAGGCTTACCAGAAACCACCGTGAAGGAAGCGCGCGATCGCGTGCGCAGTGCACTCA
TTAATTGCGGATTTACGTTTCCAGCAAAACGCATCACGGTCAATCTCGCTCCCGCAGACCTGCCAAAGGAAGGGGGACGC
TACGATCTACCCATTGCTTTGGCGATTCTAGCAGCATCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTATGAGTTTCT
CGGCGAGCTTGGCCTGTCTGGCACGTTACGTGGCGTTAATGGCGCGATTCCCGCCGCCTTGGAAGCCATAAAATCAGGCC
GTCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACATTGATACCGCAGGGTGAAGCGCTGATGGCTGGTCATCTG
CTAGAGGTGTGTGCTTTTCTCCGTGGAGAAGGGGAACTACCCAGTTGCTCCACTATCACGCCCGTTATACAGGCAGGGGA
AGATACACTAGACCTGAAGGATATTATCGGTCAGGAGCAAGCTAAACGCGCATTGGAAATCGCGGCGGCAGGTGGCCACA
ACCTGTTATTGCTAGGGCCGCCAGGAACAGGGAAAACGATGCTGGCGAGTCGGCTAGGCAATCTGATGCCGCCATTGAGC
AATGAAGAGGCGTTAGAAAGCGCCGCTATCAACAGCTTGGTCAACATTGATGCCACCATGACACGCTGGCGAGCCAGGCC
CTTCAGAGCACCTCACCATAGCTCTTCCATGGCTGCACTCGTAGGTGGAGGCTCGCTGCCCAAACCCGGAGAAATCTCTC
TCGCCCACAACGGTGTACTGTTTTTGGATGAATTACCAGAGTTTGAGCGACGCGTCTTAGACTCGCTGCGAGAACCTCTG
GAATCTGGTGAAATTATCATTTCCCGCACCCGAGCCAAGGTGTGCTACCCGGCACGCGTTCAGCTCGTCGCCGCGATGAA
TCCCAGCCCGTCAGGGCATTATCAAGGCATTCATAACCGATTACCGGCTCAACAGATACTACGCTATCTCAGTAAGCTCT
CCGGCCCCTTCTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTACTGCCACCTGGAGTGTTATCTCAGCAACATTAT
CAAGGGGAAAATAGCGCGACGATTCGTGAACGCGTACTGATCGCACGACAGATACAACTGAAGCGGGCAAACAAAATCAA
CGCACTGCTTACTTCACGCGAAATAGAAAAACACTGTGCGTTAGAAGCACCTGATGCGGCTTACCTTGAGGACGTGATGA
ACAAACTTGGCTTATCCGTACGTGCCTGGCACAGGATATTGAAAGTCGCCCGCACAATCGCTGACCTTGGCGATCGGGAC
AACATTGAGAGAAAGCATCTTGCCGAAGCGCTGAGCTACCGTTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Vibrio campbellii strain DS40M4

62.823

99.016

0.622
  comM Legionella pneumophila str. Paris

50.704

97.835

0.496
  comM Legionella pneumophila strain ERS1305867

50.704

97.835

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.38

100

0.467

Multiple sequence alignment