Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACI3MD_RS18895 Genome accession   NZ_CP173521
Coordinates   3869817..3871337 (-) Length   506 a.a.
NCBI ID   WP_404997282.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 98213     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3864817..3876337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MD_RS18885 (ACI3MD_18875) hdfR 3868510..3869331 (-) 822 WP_017693775.1 HTH-type transcriptional regulator HdfR -
  ACI3MD_RS18890 (ACI3MD_18880) - 3869450..3869788 (+) 339 WP_006808641.1 DUF413 domain-containing protein -
  ACI3MD_RS18895 (ACI3MD_18885) comM 3869817..3871337 (-) 1521 WP_404997282.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACI3MD_RS18900 (ACI3MD_18890) ilvL 3871679..3871777 (+) 99 WP_001311244.1 ilv operon leader peptide -
  ACI3MD_RS18905 (ACI3MD_18895) ilvX 3871864..3871914 (+) 51 WP_166792073.1 peptide IlvX -
  ACI3MD_RS18910 (ACI3MD_18900) ilvG 3871917..3873563 (+) 1647 WP_006808639.1 acetolactate synthase 2 catalytic subunit -
  ACI3MD_RS18915 (ACI3MD_18905) ilvM 3873560..3873823 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ACI3MD_RS18920 (ACI3MD_18910) - 3873842..3874771 (+) 930 WP_006808638.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54707.72 Da        Isoelectric Point: 7.5493

>NTDB_id=1072697 ACI3MD_RS18895 WP_404997282.1 3869817..3871337(-) (comM) [Enterobacter hormaechei strain 98213]
MSLSVVYTRAAIGVKAPLISMEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPDDLSDIMGQDQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQAGMKG
ESSAAVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1072697 ACI3MD_RS18895 WP_404997282.1 3869817..3871337(-) (comM) [Enterobacter hormaechei strain 98213]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCTATCGGCGTGAAGGCACCGCTTATCTCTATGGAGGTTCATTTAAGCAA
TGGACTGCCCGGATTGACGCTGGTCGGCTTGCCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTACGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAATCTTGCGCCAGCAGATTTGCCTAAGGAGGGTGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAAGACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGCGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTCAGCCTTATCGCCGAAAAGGGATGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACATGAGCTTGCCGAACCGCAGGAGAATGACGAGGTGGCGCCAGATTCTCC
CGATGACCTCAGCGATATTATGGGCCAGGATCAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAACGGCCTGCTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTAGTCAGTTCAACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGCGCGTCTCTTACCGCGATGGTAGGCGGAGGGTCGATCCCCGGACCGGGTGAAATTTCACTGGCGC
ACAACGGCATTCTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTCCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCTGCGATGAACCCTAG
CCCTACGGGACATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACCCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGCTGAGACAAGCCGGTATGAAAGGG
GAAAGTTCAGCAGCGGTGCGCGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACGCCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCCCGCACGGTCGCTGACGTGGAAGGCTGCCCCGGCATT
GAGAGGCGCCATTTGCAGGAGGCCTTGAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437

Multiple sequence alignment