Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI3MD_RS16380 Genome accession   NZ_CP173521
Coordinates   3340193..3340723 (-) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 98213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3335193..3345723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MD_RS16350 (ACI3MD_16345) - 3335707..3336378 (-) 672 WP_006810467.1 glutathione S-transferase family protein -
  ACI3MD_RS16355 (ACI3MD_16350) soxR 3336735..3337193 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  ACI3MD_RS16360 (ACI3MD_16355) soxS 3337292..3337618 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  ACI3MD_RS16365 (ACI3MD_16360) - 3337625..3339190 (-) 1566 WP_039272953.1 EAL domain-containing protein -
  ACI3MD_RS16370 - 3339529..3339816 (-) 288 WP_148972635.1 hypothetical protein -
  ACI3MD_RS16375 (ACI3MD_16365) - 3339850..3340131 (+) 282 WP_022646751.1 YjcB family protein -
  ACI3MD_RS16380 (ACI3MD_16370) ssb 3340193..3340723 (-) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI3MD_RS16385 (ACI3MD_16375) uvrA 3340975..3343797 (+) 2823 WP_006810471.1 excinuclease ABC subunit UvrA -
  ACI3MD_RS16390 (ACI3MD_16380) - 3343801..3344154 (-) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  ACI3MD_RS16395 (ACI3MD_16385) - 3344157..3344573 (-) 417 WP_032673703.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI3MD_RS16400 (ACI3MD_16390) aphA 3344686..3345399 (-) 714 WP_006810474.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=1072691 ACI3MD_RS16380 WP_006810470.1 3340193..3340723(-) (ssb) [Enterobacter hormaechei strain 98213]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1072691 ACI3MD_RS16380 WP_006810470.1 3340193..3340723(-) (ssb) [Enterobacter hormaechei strain 98213]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCAACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTAAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369

Multiple sequence alignment