Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RE428_RS03320 Genome accession   NZ_AP028878
Coordinates   753331..754854 (+) Length   507 a.a.
NCBI ID   WP_004578956.1    Uniprot ID   N6W3H9
Organism   Marinobacter nanhaiticus D15-8W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 748331..759854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE428_RS03300 (RE428_06680) speE 750040..750900 (+) 861 WP_004578960.1 polyamine aminopropyltransferase -
  RE428_RS03305 (RE428_06690) - 750979..752250 (-) 1272 WP_004578959.1 ammonium transporter -
  RE428_RS03310 (RE428_06700) glnK 752328..752666 (-) 339 WP_004578958.1 P-II family nitrogen regulator -
  RE428_RS03315 (RE428_06710) - 752991..753251 (+) 261 WP_004578957.1 accessory factor UbiK family protein -
  RE428_RS03320 (RE428_06720) comM 753331..754854 (+) 1524 WP_004578956.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RE428_RS03325 (RE428_06730) - 754868..755974 (-) 1107 WP_004578955.1 histone deacetylase -
  RE428_RS03330 (RE428_06740) trmB 756193..756918 (+) 726 WP_040882772.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RE428_RS03335 (RE428_06750) - 757487..758014 (-) 528 WP_004578953.1 hypothetical protein -
  RE428_RS03340 (RE428_06760) hemW 758011..759165 (-) 1155 WP_004578952.1 radical SAM family heme chaperone HemW -
  RE428_RS03345 (RE428_06770) rdgB 759162..759770 (-) 609 WP_004578951.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54493.53 Da        Isoelectric Point: 6.8908

>NTDB_id=107246 RE428_RS03320 WP_004578956.1 753331..754854(+) (comM) [Marinobacter nanhaiticus D15-8W]
MLAIVHTRARLGVSAPPVTVEIHLSNGLPSLSIVGLPETAVRESKDRVRSALMNAGFEFPTRRITINLAPADLPKEGGRF
DLPIALGILAASGQIPSERLQGLECIGELALDGALRPVRGVLPAVMAAREAGRQLLIPAENGEEAGLAAADDVYAADHLL
KVVAHLCDEERLSPLARCPEPPIDMGCPDLRDVRGQHVPKRALEIAAAGSHNLLLFGPPGTGKSMLASRMPGILPPLTDG
AALEVASVRSVAGETVDPGSWRRPPYRAPHHTASAVALVGGGSSPRPGEISLAHRGVLFMDELPEFDRKVLEVLREPMES
GEIVISRAAQQVTYPARFQVVAAMNPCPCGYRGHPSIDCQCSPQQVARYQSRLSGPLLDRFDLHVEVPVQSGETLLRQDA
KPLDSQTVRERVLRAREVQAARGVLNADLSGDALDHYCRPGEAGERMLAQAMERLGLSARALHRILRVARTLADLAGDEE
LQQTHLVEALGYRKLDRRHTQVTAPTG

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=107246 RE428_RS03320 WP_004578956.1 753331..754854(+) (comM) [Marinobacter nanhaiticus D15-8W]
ATGCTCGCCATAGTCCATACGCGCGCCCGTCTGGGCGTCTCTGCGCCACCGGTTACCGTAGAAATTCACCTGTCCAACGG
ATTGCCTTCCCTCTCGATCGTCGGCTTACCTGAAACGGCAGTCCGCGAGTCGAAGGACCGGGTTCGCAGTGCGCTGATGA
ACGCCGGTTTCGAATTTCCCACCCGCCGCATAACGATCAACCTTGCGCCTGCAGATCTTCCCAAGGAAGGCGGGCGTTTC
GACCTTCCTATTGCCCTCGGCATTCTCGCGGCGTCCGGGCAAATTCCCTCTGAACGCCTCCAGGGCCTGGAATGTATCGG
TGAGCTGGCCCTTGATGGTGCATTGCGTCCGGTACGCGGCGTATTGCCGGCGGTCATGGCTGCGCGGGAAGCGGGCAGGC
AGCTACTTATTCCGGCGGAGAACGGCGAAGAAGCCGGATTGGCAGCGGCGGATGACGTCTACGCTGCCGATCACCTGCTG
AAAGTGGTTGCCCATCTATGCGACGAAGAGCGCTTGTCGCCGCTGGCACGATGCCCTGAGCCACCCATCGACATGGGATG
CCCGGACCTGCGGGACGTGCGCGGCCAGCATGTCCCCAAGCGGGCATTGGAGATCGCGGCAGCCGGATCGCACAATCTCT
TGCTCTTCGGCCCGCCAGGTACTGGCAAGAGTATGCTGGCCAGCCGCATGCCGGGCATCCTGCCGCCGTTAACCGACGGT
GCTGCGCTGGAGGTGGCCAGTGTGCGGTCGGTGGCAGGTGAAACGGTCGACCCTGGTAGTTGGCGGCGTCCACCCTATCG
CGCCCCGCACCATACCGCTTCCGCCGTGGCCCTGGTGGGTGGCGGCAGTTCACCGCGGCCGGGCGAGATCTCCCTGGCGC
ATCGCGGGGTGCTGTTCATGGATGAGCTTCCCGAATTTGACCGCAAGGTGCTGGAAGTTCTGCGTGAACCCATGGAGTCC
GGGGAGATCGTGATTTCCCGTGCGGCCCAGCAGGTGACCTATCCGGCGCGATTCCAGGTTGTCGCCGCCATGAACCCTTG
TCCGTGTGGGTACCGGGGACACCCGAGTATCGACTGCCAGTGTTCGCCCCAGCAGGTGGCCCGTTACCAATCCCGCCTGT
CGGGACCGTTGCTGGACCGGTTCGACCTGCATGTGGAAGTGCCGGTGCAAAGCGGCGAGACATTGCTGCGACAGGACGCC
AAGCCGCTGGATAGCCAGACGGTGCGTGAACGGGTATTGCGCGCGCGCGAGGTTCAGGCCGCTCGCGGGGTGCTCAATGC
CGACCTCAGCGGCGACGCCCTGGACCATTACTGCCGTCCCGGCGAAGCCGGCGAGCGCATGCTGGCCCAGGCTATGGAGC
GTCTCGGGCTATCGGCGCGGGCCTTGCACCGTATCCTGCGGGTGGCGCGGACGCTGGCCGACCTCGCCGGCGACGAGGAG
TTGCAGCAGACCCACCTGGTGGAGGCTTTGGGATACCGTAAACTGGATCGACGTCACACGCAGGTGACTGCGCCGACTGG
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-493)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6W3H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.563

99.408

0.542
  comM Glaesserella parasuis strain SC1401

54.183

99.014

0.536
  comM Vibrio campbellii strain DS40M4

53.77

99.408

0.535
  comM Haemophilus influenzae Rd KW20

53.984

99.014

0.535
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.224

100

0.458

Multiple sequence alignment