Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACI3L8_RS09110 | Genome accession | NZ_CP173391 |
| Coordinates | 2004204..2004740 (+) | Length | 178 a.a. |
| NCBI ID | WP_005432828.1 | Uniprot ID | A0A812GP34 |
| Organism | Vibrio campbellii strain LB3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1999204..2009740
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI3L8_RS09095 (ACI3L8_09095) | uvrA | 1999268..2002090 (-) | 2823 | WP_077200162.1 | excinuclease ABC subunit UvrA | - |
| ACI3L8_RS09100 (ACI3L8_09100) | galU | 2002229..2003101 (-) | 873 | WP_005432802.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACI3L8_RS09105 (ACI3L8_09105) | qstR | 2003266..2003910 (-) | 645 | WP_005432827.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACI3L8_RS09110 (ACI3L8_09110) | ssb | 2004204..2004740 (+) | 537 | WP_005432828.1 | single-stranded DNA-binding protein | Machinery gene |
| ACI3L8_RS09115 (ACI3L8_09115) | csrD | 2004988..2006997 (+) | 2010 | WP_086368946.1 | RNase E specificity factor CsrD | - |
| ACI3L8_RS09120 (ACI3L8_09120) | - | 2007009..2008457 (+) | 1449 | WP_086368947.1 | MSHA biogenesis protein MshI | - |
| ACI3L8_RS09125 (ACI3L8_09125) | gspM | 2008454..2009104 (+) | 651 | WP_038891137.1 | type II secretion system protein GspM | - |
| ACI3L8_RS09130 (ACI3L8_09130) | - | 2009097..2009426 (+) | 330 | WP_005533781.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19774.84 Da Isoelectric Point: 4.9269
>NTDB_id=1072021 ACI3L8_RS09110 WP_005432828.1 2004204..2004740(+) (ssb) [Vibrio campbellii strain LB3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=1072021 ACI3L8_RS09110 WP_005432828.1 2004204..2004740(+) (ssb) [Vibrio campbellii strain LB3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGATGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGATGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.447 |
100 |
0.809 |
| ssb | Glaesserella parasuis strain SC1401 |
56.545 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
48.333 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.333 |
100 |
0.489 |