Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACI3L5_RS01035 Genome accession   NZ_CP173389
Coordinates   219534..221057 (+) Length   507 a.a.
NCBI ID   WP_045421082.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 214534..226057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS01020 (ACI3L5_01020) ilvE 216178..217116 (-) 939 WP_009708024.1 branched-chain-amino-acid transaminase -
  ACI3L5_RS01025 (ACI3L5_01025) ilvM 217129..217413 (-) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  ACI3L5_RS01030 (ACI3L5_01030) ilvG 217425..219071 (-) 1647 WP_045371937.1 acetolactate synthase 2 catalytic subunit -
  ACI3L5_RS01035 (ACI3L5_01035) comM 219534..221057 (+) 1524 WP_045421082.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACI3L5_RS01040 (ACI3L5_01040) - 221068..221901 (-) 834 WP_404973344.1 diguanylate cyclase domain-containing protein -
  ACI3L5_RS01045 (ACI3L5_01045) - 222046..223002 (-) 957 WP_404973345.1 DUF2860 domain-containing protein -
  ACI3L5_RS01050 (ACI3L5_01050) - 223172..224050 (+) 879 WP_005429796.1 acyltransferase -
  ACI3L5_RS01055 (ACI3L5_01055) - 224120..224722 (-) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACI3L5_RS01060 (ACI3L5_01060) - 224757..225743 (-) 987 WP_045371983.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54971.07 Da        Isoelectric Point: 9.0787

>NTDB_id=1071950 ACI3L5_RS01035 WP_045421082.1 219534..221057(+) (comM) [Vibrio campbellii strain LB10]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRRLVVPHTNGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1071950 ACI3L5_RS01035 WP_045421082.1 219534..221057(+) (comM) [Vibrio campbellii strain LB10]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGTGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCGGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAATTAGCCCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTATTGCCCGCTGCATTGGCTGCGAACAAAAAACAGC
GCCGTTTAGTGGTGCCTCATACTAATGGCGATCAGGCGGCACTTGTCGGCAAGGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCAGAGCTTTGTGGTCAACACCAATTGAATTTGTACCAAACGCCCAAGAAGAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAGGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGCGAAATCAATGAACACAATTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGCTTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGTAGTGGTAAGGTAAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGTTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGCATCATCAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCACCGCAA
ATTGAGCGAACACATCTTGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.606

100

0.996
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

49.799

98.225

0.489
  comM Legionella pneumophila strain ERS1305867

49.799

98.225

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment