Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACI3L7_RS03745 Genome accession   NZ_CP173387
Coordinates   790149..791672 (-) Length   507 a.a.
NCBI ID   WP_005429794.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 785149..796672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS03720 (ACI3L7_03720) - 785464..786450 (+) 987 WP_404970479.1 serine/threonine protein kinase -
  ACI3L7_RS03725 (ACI3L7_03725) - 786485..787087 (+) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACI3L7_RS03730 (ACI3L7_03730) - 787156..788034 (-) 879 WP_005429796.1 acyltransferase -
  ACI3L7_RS03735 (ACI3L7_03735) - 788204..789160 (+) 957 WP_404970248.1 DUF2860 domain-containing protein -
  ACI3L7_RS03740 (ACI3L7_03740) - 789305..790138 (+) 834 WP_404970249.1 diguanylate cyclase domain-containing protein -
  ACI3L7_RS03745 (ACI3L7_03745) comM 790149..791672 (-) 1524 WP_005429794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACI3L7_RS03750 (ACI3L7_03750) ilvG 792135..793781 (+) 1647 WP_045371937.1 acetolactate synthase 2 catalytic subunit -
  ACI3L7_RS03755 (ACI3L7_03755) ilvM 793793..794077 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  ACI3L7_RS03760 (ACI3L7_03760) ilvE 794090..795028 (+) 939 WP_005429790.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54941.05 Da        Isoelectric Point: 9.0787

>NTDB_id=1071920 ACI3L7_RS03745 WP_005429794.1 790149..791672(-) (comM) [Vibrio campbellii strain LB135]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1071920 ACI3L7_RS03745 WP_005429794.1 790149..791672(-) (comM) [Vibrio campbellii strain LB135]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACAGTCAATTTGGCACCGGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGGATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCTCTTTCTGGTGGATTGAGAACGGTAAAGGGCGTATTGCCCGCTGCATTGGCTGCGAACAAAAAACAGC
GCCGTTTAGTGGTGCCTCATGCCAATGGTGATCAGGCGGCACTTGTCGGCAAGGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCTGAGCTGTGTGGCCAACATCAACTGAACTTGTATCAAACGCCCAAGAAAAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAAGGAAAGCGCGCTTTAGAAATTGCGGCTGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACACAACTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGTGAAATATCTTTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGCTTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGATTGTATGCTGGCTCGTAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGCTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGCATCATCAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCACCGCAA
ATTGAGCGAACGCACCTAGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.803

100

0.998
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment