Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIOG0_RS21045 Genome accession   NZ_CP173260
Coordinates   4543325..4544848 (+) Length   507 a.a.
NCBI ID   WP_128451670.1    Uniprot ID   -
Organism   Yersinia vastinensis strain SCPM-O-B-3977 (686)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4538325..4549848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIOG0_RS21025 (ACIOG0_21025) - 4539899..4540828 (-) 930 WP_050101929.1 branched-chain amino acid transaminase -
  ACIOG0_RS21030 (ACIOG0_21030) ilvM 4540851..4541108 (-) 258 WP_025379943.1 acetolactate synthase 2 small subunit -
  ACIOG0_RS21035 (ACIOG0_21035) ilvG 4541105..4542751 (-) 1647 WP_050101930.1 acetolactate synthase 2 catalytic subunit -
  ACIOG0_RS21040 (ACIOG0_21040) ilvL 4542893..4542991 (-) 99 WP_071817873.1 ilv operon leader peptide -
  ACIOG0_RS21045 (ACIOG0_21045) comM 4543325..4544848 (+) 1524 WP_128451670.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIOG0_RS21050 (ACIOG0_21050) - 4544941..4545279 (-) 339 WP_050101932.1 DUF413 domain-containing protein -
  ACIOG0_RS21055 (ACIOG0_21055) hdfR 4545399..4546280 (+) 882 WP_050101933.1 HTH-type transcriptional regulator HdfR -
  ACIOG0_RS21060 (ACIOG0_21060) yjfF 4546267..4547259 (-) 993 WP_050101934.1 galactofuranose ABC transporter, permease protein YjfF -
  ACIOG0_RS21065 (ACIOG0_21065) ytfT 4547259..4548257 (-) 999 WP_050101935.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACIOG0_RS21070 (ACIOG0_21070) ytfR 4548290..4549780 (-) 1491 WP_050101936.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54953.41 Da        Isoelectric Point: 8.2144

>NTDB_id=1071225 ACIOG0_RS21045 WP_128451670.1 4543325..4544848(+) (comM) [Yersinia vastinensis strain SCPM-O-B-3977 (686)]
MSLAIIHTRATLGIQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLTHYEFLGELALSGALRRVNGAIPAAIASNLAHRQLILPGANSHEIGLIPQGNSWVADHL
LAVCGFLQGETTLEKGQSIEYKTNSDKSLDLQDIIGQSQAKRALEITAAGGHNLLLLGPPGTGKTMLANRLTGLLPPLTD
QEALEAAAINGLLHSNELPTLWRSRAFRAPHHSTSMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKVRFPAKVQLIAAMNPSPSGHYQGIHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGTQKHQ
GENSETVRQRVLRAREKQLGRAGKINSELNSQEISEYCCLAPENAVFLEQVLLTLGLSVRAWHHILKVARTIADLALEDN
IQKKHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1071225 ACIOG0_RS21045 WP_128451670.1 4543325..4544848(+) (comM) [Yersinia vastinensis strain SCPM-O-B-3977 (686)]
ATGTCATTAGCCATTATTCACACCCGCGCCACATTAGGTATTCAGGCCCCCTCAGTCACGGTTGAAGTCCATATCAGCAA
TGGCTTGCCAGGGCTAACCTTGGTTGGATTACCAGAGACAACGGTAAAAGAGGCTCGGGACCGCGTTCGAAGCGCACTGA
TCAACAGCGGTTTCACCTTTCCCGCCAAACGGATCACTGTCAGTTTAGCCCCAGCAGATTTACCCAAAGAGGGCGGTCGC
TATGACCTGCCTATTGCTTTAGCGATATTGGCCGCTTCAGAGCAGATTCCTGCGGATAAATTAACGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCAGGAGCACTAAGGCGGGTTAACGGCGCAATTCCGGCGGCAATTGCCAGCAACCTAGCACATC
GACAATTAATTCTGCCCGGCGCAAATAGCCATGAAATTGGGCTTATTCCACAAGGTAACAGTTGGGTCGCGGATCACTTA
CTCGCTGTCTGCGGATTTTTGCAAGGTGAAACTACACTTGAGAAAGGCCAATCCATTGAATATAAGACAAATTCTGATAA
AAGCCTTGATCTGCAAGACATCATTGGTCAATCACAAGCGAAGCGCGCGCTAGAGATAACGGCTGCCGGTGGGCATAACT
TGCTGTTACTCGGGCCACCGGGCACGGGTAAAACCATGTTAGCCAATCGATTAACCGGCTTGCTGCCCCCACTCACAGAT
CAAGAAGCGCTGGAGGCCGCTGCTATTAATGGCCTATTACACAGTAATGAATTACCTACTCTGTGGCGCAGCCGAGCTTT
TCGTGCCCCACATCATAGTACCTCAATGGCCGCACTGATTGGCGGAGGCTCTATTCCCCGCCCTGGTGAAATATCACTGG
CACATAATGGCGTACTTTTTCTAGACGAGTTGCCGGAATTTGAGCGCCGGGTGCTGGATTCGCTGCGTGAACCTCTTGAG
TCTGGTGAAATTATCATTTCCCGTGCGGCAGCTAAAGTGCGTTTCCCGGCTAAAGTACAACTCATAGCCGCGATGAATCC
CAGCCCCAGTGGTCATTATCAAGGTATCCATAACCGAACACCGCCACAACAGATACTGCGCTATCTGGCAAAACTGTCAG
GCCCGTTTTTGGACAGATTCGATTTATCAATAGAAGTGCCATTACTGCCAGCTGGTATGTTAGGTACGCAAAAACATCAG
GGGGAAAATAGCGAAACCGTCAGGCAACGAGTATTACGGGCAAGAGAAAAACAACTGGGCAGAGCGGGGAAGATAAATTC
AGAACTTAATAGCCAAGAAATATCCGAATACTGCTGTCTAGCGCCGGAGAATGCGGTATTTCTGGAGCAAGTTCTGCTGA
CTCTAGGGCTGTCAGTGCGTGCCTGGCACCATATTTTGAAAGTTGCGCGGACTATCGCTGATCTGGCTCTGGAAGATAAT
ATCCAAAAAAAGCATCTTTCCGAGGCGCTAAGCTACCGTTGTATGGACCGACTGCTCTTGCAGTTGCATAAGAGCCTAAT
GTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.014

0.631
  comM Haemophilus influenzae Rd KW20

62.846

99.803

0.627
  comM Glaesserella parasuis strain SC1401

62.722

100

0.627
  comM Vibrio campbellii strain DS40M4

62.749

99.014

0.621
  comM Legionella pneumophila str. Paris

50.699

98.817

0.501
  comM Legionella pneumophila strain ERS1305867

50.699

98.817

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.652

99.803

0.456

Multiple sequence alignment