Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACIRXL_RS08755 | Genome accession | NZ_CP173236 |
| Coordinates | 1752787..1753218 (+) | Length | 143 a.a. |
| NCBI ID | WP_035687024.1 | Uniprot ID | A0A0F5ESJ8 |
| Organism | Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1747787..1758218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIRXL_RS08730 (ACIRXL_08730) | - | 1747943..1748794 (-) | 852 | WP_410680659.1 | thymidylate synthase | - |
| ACIRXL_RS08735 (ACIRXL_08735) | lgt | 1748806..1749606 (-) | 801 | WP_410680658.1 | prolipoprotein diacylglyceryl transferase | - |
| ACIRXL_RS08740 (ACIRXL_08740) | - | 1749616..1750407 (-) | 792 | WP_410680657.1 | sulfite exporter TauE/SafE family protein | - |
| ACIRXL_RS08745 (ACIRXL_08745) | rppH | 1750410..1751003 (-) | 594 | WP_264245767.1 | RNA pyrophosphohydrolase | - |
| ACIRXL_RS08750 (ACIRXL_08750) | ampD | 1752093..1752647 (-) | 555 | WP_410680656.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACIRXL_RS08755 (ACIRXL_08755) | pilA | 1752787..1753218 (+) | 432 | WP_035687024.1 | pilin | Machinery gene |
| ACIRXL_RS08760 (ACIRXL_08760) | pilB | 1753231..1754655 (+) | 1425 | WP_035687022.1 | GspE/PulE family protein | Machinery gene |
| ACIRXL_RS08765 (ACIRXL_08765) | pyrH | 1754905..1755621 (+) | 717 | WP_035687020.1 | UMP kinase | - |
| ACIRXL_RS08770 (ACIRXL_08770) | frr | 1755646..1756203 (+) | 558 | WP_017807054.1 | ribosome recycling factor | - |
| ACIRXL_RS08775 (ACIRXL_08775) | ispC | 1756384..1757580 (+) | 1197 | WP_410680655.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15205.70 Da Isoelectric Point: 9.8115
>NTDB_id=1071110 ACIRXL_RS08755 WP_035687024.1 1752787..1753218(+) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
Nucleotide
Download Length: 432 bp
>NTDB_id=1071110 ACIRXL_RS08755 WP_035687024.1 1752787..1753218(+) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACTATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAGGTGGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACTATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAGGTGGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
59.31 |
100 |
0.601 |
| pilA | Haemophilus influenzae 86-028NP |
57.931 |
100 |
0.587 |
| pilA | Glaesserella parasuis strain SC1401 |
46.809 |
98.601 |
0.462 |
| pilA | Vibrio campbellii strain DS40M4 |
34.615 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.324 |
99.301 |
0.371 |