Detailed information NTG1071085

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACIRXM_RS11855
• Genome accession: NZ_CP173234
• Coordinates: 2458302..2458733 (-)
• Length: 143 a.a.
• NCBI ID: WP_410686631.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2453302..2463733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIRXM_RS11835 (ACIRXM_11840)	ispC	2453939..2455135 (-)	1197	WP_410686630.1	1-deoxy-D-xylulose-5-phosphate reductoisomerase	-
ACIRXM_RS11840 (ACIRXM_11845)	frr	2455317..2455874 (-)	558	WP_017807054.1	ribosome recycling factor	-
ACIRXM_RS11845 (ACIRXM_11850)	pyrH	2455899..2456615 (-)	717	WP_035687020.1	UMP kinase	-
ACIRXM_RS11850 (ACIRXM_11855)	pilB	2456865..2458289 (-)	1425	WP_046097579.1	GspE/PulE family protein	Machinery gene
ACIRXM_RS11855 (ACIRXM_11860)	pilA	2458302..2458733 (-)	432	WP_410686631.1	pilin	Machinery gene
ACIRXM_RS11860 (ACIRXM_11865)	ampD	2458873..2459427 (+)	555	WP_410680656.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACIRXM_RS11865 (ACIRXM_11870)	-	2459526..2459945 (+)	420	WP_410686632.1	hypothetical protein	-
ACIRXM_RS11870 (ACIRXM_11875)	rppH	2460517..2461110 (+)	594	WP_410686634.1	RNA pyrophosphohydrolase	-
ACIRXM_RS11875 (ACIRXM_11880)	-	2461113..2461904 (+)	792	WP_410686635.1	sulfite exporter TauE/SafE family protein	-
ACIRXM_RS11880 (ACIRXM_11885)	lgt	2461914..2462714 (+)	801	WP_017807046.1	prolipoprotein diacylglyceryl transferase	-
ACIRXM_RS11885 (ACIRXM_11890)	-	2462726..2463577 (+)	852	WP_410686637.1	thymidylate synthase	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 15231.78 Da
• Isoelectric Point: 9.8115

>NTDB_id=1071085 ACIRXM_RS11855 WP_410686631.1 2458302..2458733(-) (pilA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGLNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG

Nucleotide

• Length: 432 bp

>NTDB_id=1071085 ACIRXM_RS11855 WP_410686631.1 2458302..2458733(-) (pilA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACCATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAAGTAGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTTAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (9-32)

• Pilin (bacterial filament) (Pilin) (42-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Haemophilus influenzae Rd KW20	59.31	100	0.601
pilA	Haemophilus influenzae 86-028NP	57.931	100	0.587
pilA	Glaesserella parasuis strain SC1401	46.809	98.601	0.462
pilA	Vibrio campbellii strain DS40M4	34.615	100	0.378