Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIRXM_RS02605 Genome accession   NZ_CP173234
Coordinates   503031..504566 (+) Length   511 a.a.
NCBI ID   WP_035686457.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 498031..509566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS02585 (ACIRXM_02590) selB 498095..499954 (-) 1860 WP_410687161.1 selenocysteine-specific translation elongation factor -
  ACIRXM_RS02590 (ACIRXM_02595) selA 499951..501336 (-) 1386 WP_410687162.1 L-seryl-tRNA(Sec) selenium transferase -
  ACIRXM_RS02595 (ACIRXM_02600) - 501581..501919 (-) 339 WP_035686453.1 YggL family protein -
  ACIRXM_RS02600 (ACIRXM_02605) trmB 501949..502701 (-) 753 WP_410687165.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACIRXM_RS02605 (ACIRXM_02610) comM 503031..504566 (+) 1536 WP_035686457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIRXM_RS02610 (ACIRXM_02615) - 504674..506206 (-) 1533 WP_410687166.1 pyridoxal phosphate-dependent decarboxylase family protein -
  ACIRXM_RS02615 (ACIRXM_02620) - 506284..507648 (-) 1365 WP_410687168.1 diaminobutyrate--2-oxoglutarate transaminase -
  ACIRXM_RS02620 (ACIRXM_02625) - 507910..508347 (-) 438 WP_410687169.1 hypothetical protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55894.41 Da        Isoelectric Point: 9.9640

>NTDB_id=1071066 ACIRXM_RS02605 WP_035686457.1 503031..504566(+) (comM) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVKRRTIIAKSNANEAALVADQESYIAQNL
LEVVQFLNDTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGETSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1071066 ACIRXM_RS02605 WP_035686457.1 503031..504566(+) (comM) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAGGTGCATTTAAGCAA
CGGAAAGCCTGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTAGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCTGCGATTTTAGCTGCGAGAAAGGTAAAGC
GTCGTACCATAATTGCGAAATCCAACGCGAATGAAGCCGCCCTAGTCGCTGATCAAGAGAGTTACATCGCTCAAAATTTA
CTTGAAGTGGTGCAATTTCTTAATGATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCCAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACTAGTTTAGTGCAAAATGAGCTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGTGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCCAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAAACCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTATCCTATCGAGCAATGGATCGACTACTACAAAAGCTGTC
CCGTAATCTAGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.643

99.217

0.82
  comM Glaesserella parasuis strain SC1401

75.345

99.217

0.748
  comM Vibrio cholerae strain A1552

65.286

99.217

0.648
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.299

98.043

0.493
  comM Legionella pneumophila strain ERS1305867

50.299

98.043

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.484

100

0.466

Multiple sequence alignment