Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIO08_RS07175 Genome accession   NZ_CP173233
Coordinates   1479089..1480624 (-) Length   511 a.a.
NCBI ID   WP_410677844.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1474089..1485624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS07160 (ACIO08_07160) - 1475308..1475745 (+) 438 WP_410677841.1 hypothetical protein -
  ACIO08_RS07165 (ACIO08_07165) - 1476007..1477371 (+) 1365 WP_110479509.1 diaminobutyrate--2-oxoglutarate transaminase -
  ACIO08_RS07170 (ACIO08_07170) - 1477449..1478981 (+) 1533 WP_410677843.1 pyridoxal phosphate-dependent decarboxylase family protein -
  ACIO08_RS07175 (ACIO08_07175) comM 1479089..1480624 (-) 1536 WP_410677844.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIO08_RS07180 (ACIO08_07180) trmB 1480952..1481704 (+) 753 WP_410677846.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACIO08_RS07185 (ACIO08_07185) - 1481734..1482072 (+) 339 WP_035686453.1 YggL family protein -
  ACIO08_RS07190 (ACIO08_07190) selA 1482317..1483702 (+) 1386 WP_410677847.1 L-seryl-tRNA(Sec) selenium transferase -
  ACIO08_RS07195 (ACIO08_07195) selB 1483699..1485558 (+) 1860 WP_410677848.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55910.41 Da        Isoelectric Point: 9.9640

>NTDB_id=1071045 ACIO08_RS07175 WP_410677844.1 1479089..1480624(-) (comM) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVKRRTIIAKSNTNEAALVADQESYIAQNL
LEVVQFLNDTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGESSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1071045 ACIO08_RS07175 WP_410677844.1 1479089..1480624(-) (comM) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAGGTGCATTTAAGCAA
CGGAAAGCCAGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTGGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCTGCGATTTTAGCTGCGAGAAAGGTAAAGC
GTCGTACCATAATTGCGAAATCCAACACGAATGAAGCCGCCCTAGTCGCTGATCAAGAGAGTTACATCGCTCAAAATTTG
CTTGAAGTGGTGCAGTTTCTTAATGATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCTAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACCAGTTTAGTGCAAAATGAGCTGAATTTTCATAATTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGTGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCTAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTGCCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAGTCCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTATCCTATCGAGCAATGGATCGACTACTACAAAAGCTGTC
CCGTAATCTAGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.249

99.217

0.816
  comM Glaesserella parasuis strain SC1401

74.951

99.217

0.744
  comM Vibrio cholerae strain A1552

65.483

99.217

0.65
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.1

98.043

0.491
  comM Legionella pneumophila strain ERS1305867

50.1

98.043

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.875

100

0.47

Multiple sequence alignment