Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIO05_RS01080 Genome accession   NZ_CP173232
Coordinates   220015..221550 (+) Length   511 a.a.
NCBI ID   WP_264255944.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 215015..226550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS01060 (ACIO05_01060) selB 215079..216938 (-) 1860 WP_410681372.1 selenocysteine-specific translation elongation factor -
  ACIO05_RS01065 (ACIO05_01065) selA 216935..218320 (-) 1386 WP_410677847.1 L-seryl-tRNA(Sec) selenium transferase -
  ACIO05_RS01070 (ACIO05_01070) - 218565..218903 (-) 339 WP_035686453.1 YggL family protein -
  ACIO05_RS01075 (ACIO05_01075) trmB 218933..219685 (-) 753 WP_264255945.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACIO05_RS01080 (ACIO05_01080) comM 220015..221550 (+) 1536 WP_264255944.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIO05_RS01085 (ACIO05_01085) - 221658..223190 (-) 1533 WP_410677843.1 pyridoxal phosphate-dependent decarboxylase family protein -
  ACIO05_RS01090 (ACIO05_01090) - 223268..224632 (-) 1365 WP_110479509.1 diaminobutyrate--2-oxoglutarate transaminase -
  ACIO05_RS01095 (ACIO05_01095) - 224894..225331 (-) 438 WP_410677841.1 hypothetical protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55893.43 Da        Isoelectric Point: 10.0542

>NTDB_id=1071007 ACIO05_RS01080 WP_264255944.1 220015..221550(+) (comM) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVKRRTIIAKSNANEAALVADQESYIAQNL
LEVVQFLNNTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGETSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1071007 ACIO05_RS01080 WP_264255944.1 220015..221550(+) (comM) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAGGTGCATTTAAGCAA
CGGAAAGCCAGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTAGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCTGCGATTTTAGCTGCGAGAAAGGTAAAGC
GTCGTACCATAATTGCGAAATCCAACGCGAATGAAGCCGCCCTAGTCGCTGATCAAGAGAGTTACATCGCTCAAAATTTA
CTTGAAGTGGTGCAATTTCTTAATAATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCCAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACCAGTTTAGTGCAAAATGAGCTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGTGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCCAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAAACCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTATCCTATCGAGCAATGGATCGACTACTACAAAAGCTGTC
CCGTAATCTAGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.643

99.217

0.82
  comM Glaesserella parasuis strain SC1401

75.542

99.217

0.75
  comM Vibrio cholerae strain A1552

65.286

99.217

0.648
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.299

98.043

0.493
  comM Legionella pneumophila strain ERS1305867

50.299

98.043

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.484

100

0.466

Multiple sequence alignment