Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIO04_RS05840 Genome accession   NZ_CP173229
Coordinates   1195836..1197371 (+) Length   511 a.a.
NCBI ID   WP_410679448.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1190836..1202371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS05820 (ACIO04_05820) selB 1190900..1192759 (-) 1860 WP_410680996.1 selenocysteine-specific translation elongation factor -
  ACIO04_RS05825 (ACIO04_05825) selA 1192756..1194141 (-) 1386 WP_410680997.1 L-seryl-tRNA(Sec) selenium transferase -
  ACIO04_RS05830 (ACIO04_05830) - 1194386..1194724 (-) 339 WP_035686453.1 YggL family protein -
  ACIO04_RS05835 (ACIO04_05835) trmB 1194754..1195506 (-) 753 WP_410680999.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACIO04_RS05840 (ACIO04_05840) comM 1195836..1197371 (+) 1536 WP_410679448.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIO04_RS05845 (ACIO04_05845) - 1197479..1199011 (-) 1533 WP_410679449.1 pyridoxal phosphate-dependent decarboxylase family protein -
  ACIO04_RS05850 (ACIO04_05850) - 1199089..1200453 (-) 1365 WP_194751499.1 diaminobutyrate--2-oxoglutarate transaminase -
  ACIO04_RS05855 (ACIO04_05855) - 1200819..1201256 (-) 438 WP_410679450.1 hypothetical protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55879.40 Da        Isoelectric Point: 10.0542

>NTDB_id=1070932 ACIO04_RS05840 WP_410679448.1 1195836..1197371(+) (comM) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVNRRTIIAKSNANEAALVADQKSYIAQNL
LEVVQFLNDTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGETSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1070932 ACIO04_RS05840 WP_410679448.1 1195836..1197371(+) (comM) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAGGTGCATTTAAGCAA
CGGAAAGCCAGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTGGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCCGCGATTTTAGCTGCAAGAAAGGTAAACC
GTCGTACCATAATTGCGAAATCCAACGCAAATGAAGCCGCCCTAGTCGCTGATCAAAAGAGTTACATCGCTCAAAATTTA
CTTGAAGTGGTGCAATTTCTTAATGATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCCAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACTAGTTTAGTGCAAAATGAGCTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGAGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCCAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAAACCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTCTCTTATCGAGCAATGGATCGACTACTACAAAAGCTATC
TCGTAATCTAGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.446

99.217

0.818
  comM Glaesserella parasuis strain SC1401

75.148

99.217

0.746
  comM Vibrio cholerae strain A1552

65.286

99.217

0.648
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.699

98.043

0.497
  comM Legionella pneumophila strain ERS1305867

50.699

98.043

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.289

100

0.464

Multiple sequence alignment