Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACIO04_RS03390 | Genome accession | NZ_CP173229 |
| Coordinates | 723521..723952 (-) | Length | 143 a.a. |
| NCBI ID | WP_035687024.1 | Uniprot ID | A0A0F5ESJ8 |
| Organism | Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 718521..728952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIO04_RS03370 (ACIO04_03370) | ispC | 719159..720355 (-) | 1197 | WP_410680655.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ACIO04_RS03375 (ACIO04_03375) | frr | 720536..721093 (-) | 558 | WP_017807054.1 | ribosome recycling factor | - |
| ACIO04_RS03380 (ACIO04_03380) | pyrH | 721118..721834 (-) | 717 | WP_035687020.1 | UMP kinase | - |
| ACIO04_RS03385 (ACIO04_03385) | pilB | 722084..723508 (-) | 1425 | WP_035687022.1 | GspE/PulE family protein | Machinery gene |
| ACIO04_RS03390 (ACIO04_03390) | pilA | 723521..723952 (-) | 432 | WP_035687024.1 | pilin | Machinery gene |
| ACIO04_RS03395 (ACIO04_03395) | ampD | 724092..724646 (+) | 555 | WP_410680656.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACIO04_RS03400 (ACIO04_03400) | rppH | 725736..726329 (+) | 594 | WP_264245767.1 | RNA pyrophosphohydrolase | - |
| ACIO04_RS03405 (ACIO04_03405) | - | 726332..727123 (+) | 792 | WP_410680657.1 | sulfite exporter TauE/SafE family protein | - |
| ACIO04_RS03410 (ACIO04_03410) | lgt | 727133..727933 (+) | 801 | WP_410680658.1 | prolipoprotein diacylglyceryl transferase | - |
| ACIO04_RS03415 (ACIO04_03415) | - | 727945..728796 (+) | 852 | WP_410680659.1 | thymidylate synthase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15205.70 Da Isoelectric Point: 9.8115
>NTDB_id=1070925 ACIO04_RS03390 WP_035687024.1 723521..723952(-) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
Nucleotide
Download Length: 432 bp
>NTDB_id=1070925 ACIO04_RS03390 WP_035687024.1 723521..723952(-) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACTATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAGGTGGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
ATGCAAAACCCAACCCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACTATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAGGTGGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
59.31 |
100 |
0.601 |
| pilA | Haemophilus influenzae 86-028NP |
57.931 |
100 |
0.587 |
| pilA | Glaesserella parasuis strain SC1401 |
46.809 |
98.601 |
0.462 |
| pilA | Vibrio campbellii strain DS40M4 |
34.615 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.324 |
99.301 |
0.371 |