Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACIVJH_RS02515 Genome accession   NZ_CP173226
Coordinates   461866..462378 (-) Length   170 a.a.
NCBI ID   WP_404376467.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456866..467378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS02500 msrAB 457395..458963 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  ACIVJH_RS02505 pilA 459109..460329 (+) 1221 WP_113852134.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIVJH_RS02510 - 460598..461368 (-) 771 WP_404376804.1 opacity family porin -
  ACIVJH_RS02515 pilE 461866..462378 (-) 513 WP_404376467.1 pilin Machinery gene
  ACIVJH_RS02520 - 462747..462890 (-) 144 WP_113852158.1 large pilS cassette protein -
  ACIVJH_RS02525 - 463193..463296 (-) 104 Protein_476 pilin -
  ACIVJH_RS02530 pilE 463434..463844 (-) 411 WP_170123235.1 pilin Machinery gene
  ACIVJH_RS02535 lpxC 463950..464873 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ACIVJH_RS02540 - 465366..465761 (-) 396 Protein_479 pilin -
  ACIVJH_RS02545 - 466225..466567 (-) 343 Protein_480 pilin -
  ACIVJH_RS02550 - 466661..466846 (-) 186 Protein_481 pilin -
  ACIVJH_RS02555 - 466903..467250 (-) 348 Protein_482 pilin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18283.90 Da        Isoelectric Point: 9.7378

>NTDB_id=1070849 ACIVJH_RS02515 WP_404376467.1 461866..462378(-) (pilE) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASTPTDI
KGKYVESVTVAKGVVTAKMKPSGVNKEIKDKKLSLWAKRENGSVKWFCGQPVKRTAKDNDDVNADGKGNDGKIDTKHLPS
TCRDKSSAGT

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1070849 ACIVJH_RS02515 WP_404376467.1 461866..462378(-) (pilE) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCGGCATACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCACCCCCACCGACATC
AAAGGCAAATATGTTGAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCAAAATGAAACCAAGCGGCGTAAACAAAGA
AATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGC
GCACCGCCAAAGACAACGACGACGTCAACGCCGACGGCAAAGGCAACGACGGCAAAATCGACACCAAGCACCTGCCGTCA
ACCTGCCGCGATAAATCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

84.524

98.824

0.835
  pilE Neisseria gonorrhoeae strain FA1090

82.738

98.824

0.818
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.751

100

0.406

Multiple sequence alignment