Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACIVJH_RS02530 Genome accession   NZ_CP173226
Coordinates   463434..463844 (-) Length   136 a.a.
NCBI ID   WP_170123235.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458434..468844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS02505 pilA 459109..460329 (+) 1221 WP_113852134.1 signal recognition particle-docking protein FtsY Machinery gene
  ACIVJH_RS02510 - 460598..461368 (-) 771 WP_404376804.1 opacity family porin -
  ACIVJH_RS02515 pilE 461866..462378 (-) 513 WP_404376467.1 pilin Machinery gene
  ACIVJH_RS02520 - 462747..462890 (-) 144 WP_113852158.1 large pilS cassette protein -
  ACIVJH_RS02525 - 463193..463296 (-) 104 Protein_476 pilin -
  ACIVJH_RS02530 pilE 463434..463844 (-) 411 WP_170123235.1 pilin Machinery gene
  ACIVJH_RS02535 lpxC 463950..464873 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ACIVJH_RS02540 - 465366..465761 (-) 396 Protein_479 pilin -
  ACIVJH_RS02545 - 466225..466567 (-) 343 Protein_480 pilin -
  ACIVJH_RS02550 - 466661..466846 (-) 186 Protein_481 pilin -
  ACIVJH_RS02555 - 466903..467250 (-) 348 Protein_482 pilin -
  ACIVJH_RS02560 - 467290..467691 (-) 402 Protein_483 pilin -
  ACIVJH_RS02565 - 468072..468527 (-) 456 Protein_484 pilin -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14467.17 Da        Isoelectric Point: 8.4837

>NTDB_id=1070850 ACIVJH_RS02530 WP_170123235.1 463434..463844(-) (pilE) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPSDNSAAGVASSATDIKGKYVKSVTVANGVVTAQMKPSGVNKEI
QGKKLSLWAKRENGSVKWFCGQPVTRGADTVTDVADTGIDTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1070850 ACIVJH_RS02530 WP_170123235.1 463434..463844(-) (pilE) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCATCCGACAATAGTGCCGCCGGCGTGGCATCCTCCGCCACCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGG
CGCCGACACCGTTACCGACGTTGCCGACACCGGCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTG
ATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

73.913

100

0.75
  pilE Neisseria gonorrhoeae strain FA1090

70.803

100

0.713

Multiple sequence alignment