Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI0J4_RS02535 Genome accession   NZ_CP173198
Coordinates   535296..535820 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain IMT49658-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 530296..540820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI0J4_RS02510 soxR 530388..530846 (-) 459 WP_315451041.1 redox-sensitive transcriptional activator SoxR -
  ACI0J4_RS02515 soxS 530945..531271 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  ACI0J4_RS02520 - 531278..532843 (-) 1566 WP_003860279.1 EAL domain-containing protein -
  ACI0J4_RS02525 - 533109..534509 (-) 1401 WP_003860281.1 sensor domain-containing diguanylate cyclase -
  ACI0J4_RS02530 - 534953..535234 (+) 282 WP_003860282.1 YjcB family protein -
  ACI0J4_RS02535 ssb 535296..535820 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACI0J4_RS02540 uvrA 536072..538894 (+) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  ACI0J4_RS02545 - 538898..539251 (-) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  ACI0J4_RS02550 - 539254..539670 (-) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACI0J4_RS02555 aphA 539783..540496 (-) 714 WP_022650226.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=1070577 ACI0J4_RS02535 WP_003860284.1 535296..535820(-) (ssb) [Enterobacter hormaechei strain IMT49658-3]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1070577 ACI0J4_RS02535 WP_003860284.1 535296..535820(-) (ssb) [Enterobacter hormaechei strain IMT49658-3]
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment