Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SAQUA_RS23580 Genome accession   NZ_CP173186
Coordinates   5189630..5191153 (+) Length   507 a.a.
NCBI ID   WP_380678702.1    Uniprot ID   -
Organism   Serratia aquatilis strain 2015-2462-01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5184630..5196153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAQUA_RS23560 (SAQUA_23560) ilvE 5186072..5186998 (-) 927 WP_380678695.1 branched-chain-amino-acid transaminase -
  SAQUA_RS23565 (SAQUA_23565) ilvM 5187021..5187278 (-) 258 WP_380678697.1 acetolactate synthase 2 small subunit -
  SAQUA_RS23570 (SAQUA_23570) ilvG 5187275..5188921 (-) 1647 WP_380678699.1 acetolactate synthase 2 catalytic subunit -
  SAQUA_RS23575 (SAQUA_23575) ilvL 5189063..5189161 (-) 99 WP_071681478.1 ilv operon leader peptide -
  SAQUA_RS23580 (SAQUA_23580) comM 5189630..5191153 (+) 1524 WP_380678702.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SAQUA_RS23585 (SAQUA_23585) - 5191181..5191519 (-) 339 WP_380678704.1 DUF413 domain-containing protein -
  SAQUA_RS23590 (SAQUA_23590) hdfR 5191639..5192466 (+) 828 WP_380678706.1 HTH-type transcriptional regulator HdfR -
  SAQUA_RS23595 (SAQUA_23595) yjfF 5192471..5193463 (-) 993 WP_380678708.1 galactofuranose ABC transporter, permease protein YjfF -
  SAQUA_RS23600 (SAQUA_23600) ytfT 5193460..5194461 (-) 1002 WP_380678710.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  SAQUA_RS23605 (SAQUA_23605) ytfR 5194476..5195990 (-) 1515 WP_380678718.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54784.25 Da        Isoelectric Point: 8.3233

>NTDB_id=1070545 SAQUA_RS23580 WP_380678702.1 5189630..5191153(+) (comM) [Serratia aquatilis strain 2015-2462-01]
MSLAVIYTRATIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPANQLARYEFLGELALSGALRAVNGAIPAAIAATEAKRELILATANGPEAGLLPQSTARVASHL
LEVCAYLQGKGELPVAAAPPAVEALMETADLQEIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
QEALESVAVASLSHHPDEKLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGMLSKQHHP
GESTLQVRERVLKARERQLERAGKINALLNNREVDRDCHLPAVDADFLEETLSKLGLSVRAWHRILKVARTLADLAGEKN
IAKRHLSEALSYRCMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1070545 SAQUA_RS23580 WP_380678702.1 5189630..5191153(+) (comM) [Serratia aquatilis strain 2015-2462-01]
ATGTCACTGGCGGTAATCTACACACGCGCCACGATCGGCGTGCAGGCCCCCTCGGTCACGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGGCTCACGCTGGTCGGTCTACCTGAAACTACGGTAAAAGAAGCGCGAGATCGGGTGCGTAGTGCCTTGA
TCAACAATGGGTTCACCTTCCCAGCCAAGCGGATCACTGTCAATCTGGCCCCGGCGGATTTGCCCAAAGAAGGCGGACGC
TATGATTTGCCTATTGCGCTCGCCATTCTCGCGGCCTCTGAACAGATCCCCGCAAATCAGTTGGCCCGCTATGAGTTCCT
CGGTGAGTTGGCGCTTTCCGGTGCACTGAGAGCGGTCAACGGAGCTATTCCGGCAGCAATAGCTGCAACTGAGGCAAAGC
GTGAACTCATTCTGGCCACCGCAAACGGCCCAGAAGCGGGGCTACTCCCCCAAAGCACGGCTCGGGTAGCGAGCCACTTA
CTGGAAGTCTGCGCATACTTGCAAGGCAAAGGTGAACTACCTGTTGCTGCCGCGCCTCCCGCAGTTGAAGCACTAATGGA
AACCGCTGATCTGCAGGAAATCATCGGCCAGGAGCAAGCCAAAAGAGCACTGGAAATTGCCGCAGCAGGCGGCCATAACC
TGTTACTGCTTGGCCCTCCCGGTACCGGCAAAACTATGTTGGCCAGTCGCCTTAACGGTTTGTTACCACCATTGAGCGAC
CAGGAAGCCTTGGAAAGCGTCGCTGTTGCCAGCTTATCGCATCACCCGGATGAGAAATTACCGTGGCGTCAGCGACCATT
TCGTGCCCCGCACCACAGTGCATCCATGGCGGCCTTGGTAGGTGGGGGATCTTTACCTCGGCCCGGGGAGATCTCGATGG
CGCATAATGGGGTGCTGTTTCTCGACGAATTACCCGAGTTTGAACGGCGAGTTCTGGACGCACTACGCGAACCGTTGGAG
TCCGGCGAAATCGTCATTTCAAGAGCCAGCGCCAAAGTTCGCTTTCCCGCCAGGGTACAGTTAATTGCGGCGATGAACCC
AAGCCCCACGGGACACTATCAGGGAATACACAACCGGACACCGCCACAGCAGGTTTTGCGCTACCTGGGGCGCCTCTCTG
GCCCATTTCTCGATCGGTTTGACTTGTCGATTGAAGTTCCGTTATTACCCCCTGGGATGCTCAGTAAACAACACCATCCT
GGAGAAAGCACCTTACAGGTTCGTGAAAGGGTACTGAAGGCGCGTGAACGGCAACTGGAGCGCGCAGGAAAGATAAATGC
GCTGTTGAATAACCGGGAGGTGGATCGGGATTGCCATCTACCAGCGGTAGATGCGGATTTCCTGGAGGAAACCCTGAGTA
AACTGGGGTTATCAGTTCGAGCCTGGCATCGTATTCTGAAAGTAGCACGTACGCTGGCTGATTTAGCCGGGGAAAAAAAT
ATCGCTAAACGTCATCTCAGCGAGGCTCTCAGCTACCGCTGTATGGATCGCCTTTTACTGCAATTACACCGCAGCCTGGA
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Glaesserella parasuis strain SC1401

65.286

100

0.653
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

51.904

98.422

0.511
  comM Legionella pneumophila strain ERS1305867

51.904

98.422

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.275

100

0.465

Multiple sequence alignment