Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABE78_RS21455 Genome accession   NZ_AP028832
Coordinates   4476203..4477723 (+) Length   506 a.a.
NCBI ID   WP_338341290.1    Uniprot ID   -
Organism   Escherichia fergusonii strain 22C021LT     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4471203..4482723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABE78_RS21430 (Ef22C021LT_40990) ilvE 4472756..4473685 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  AABE78_RS21435 (Ef22C021LT_41000) ilvM 4473705..4473968 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  AABE78_RS21440 (Ef22C021LT_41010) ilvG 4473965..4475611 (-) 1647 WP_001012637.1 acetolactate synthase 2 catalytic subunit -
  AABE78_RS21445 ilvX 4475614..4475664 (-) 51 WP_001387183.1 peptide IlvX -
  AABE78_RS21450 ilvL 4475752..4475850 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AABE78_RS21455 (Ef22C021LT_41020) comM 4476203..4477723 (+) 1521 WP_338341290.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABE78_RS21460 (Ef22C021LT_41030) maoP 4477748..4478086 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  AABE78_RS21465 (Ef22C021LT_41040) hdfR 4478205..4479044 (+) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55276.42 Da        Isoelectric Point: 7.5913

>NTDB_id=107026 AABE78_RS21455 WP_338341290.1 4476203..4477723(+) (comM) [Escherichia fergusonii strain 22C021LT]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLTASEQLTANKLDEYELVGELALTGALRGVPGAISCATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRTIADIDQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=107026 AABE78_RS21455 WP_338341290.1 4476203..4477723(+) (comM) [Escherichia fergusonii strain 22C021LT]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCAGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTGCCTATCGCTATTGCGTTACTGACGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCTGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGCGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTAATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCAGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTACCTGAATTTGAACGACGTACACTGGATGCCTTGCGGGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTACCCGGCCCGTTTCCAGCTTGTTGCGGCGATGAACCCCAG
CCCTACTGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTTGACCGATTCGACCTCTCACTGGAGATCCCACTACCGCCACCCGGTATTTTGAGTAAAGCGGTTGTTCAGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGACGCCCAGTGGCTGGAAGAAACGCTGCTTCATC
TGGGGTTATCGATTCGTGCCTGGCAACGATTACTGAAGGTATCGAGAACTATTGCTGATATTGATCAGTCTGACGTCATC
ACACGCCAGCATTTACAGGAGGCAGTTAGCTATCGAGCTATCGATCGCTTGCTTATTCATTTACAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

57.769

99.209

0.573
  comM Legionella pneumophila str. Paris

47.992

98.419

0.472
  comM Legionella pneumophila strain ERS1305867

47.992

98.419

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441

Multiple sequence alignment