Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACIFYW_RS07945 Genome accession   NZ_CP173026
Coordinates   1790612..1790923 (-) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain SPH 24-01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785612..1795923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS07920 (ACIFYW_07920) lapB 1785805..1786974 (-) 1170 WP_071187137.1 lipopolysaccharide assembly protein LapB -
  ACIFYW_RS07925 (ACIFYW_07925) - 1786986..1787267 (-) 282 WP_033932753.1 LapA family protein -
  ACIFYW_RS07930 (ACIFYW_07930) ihfB 1787406..1787684 (-) 279 WP_000167341.1 integration host factor subunit beta -
  ACIFYW_RS07935 (ACIFYW_07935) rpsA 1787973..1789643 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  ACIFYW_RS07940 (ACIFYW_07940) cmk 1789752..1790429 (-) 678 WP_000094752.1 (d)CMP kinase -
  ACIFYW_RS07945 (ACIFYW_07945) comEA 1790612..1790923 (-) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  ACIFYW_RS07950 (ACIFYW_07950) ppiD 1791058..1792917 (-) 1860 WP_404272509.1 peptidylprolyl isomerase -
  ACIFYW_RS07955 (ACIFYW_07955) - 1793070..1793342 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  ACIFYW_RS07960 (ACIFYW_07960) lon 1793526..1795886 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=1070038 ACIFYW_RS07945 WP_001166105.1 1790612..1790923(-) (comEA) [Vibrio cholerae strain SPH 24-01]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1070038 ACIFYW_RS07945 WP_001166105.1 1790612..1790923(-) (comEA) [Vibrio cholerae strain SPH 24-01]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGCCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment