Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIHQS_RS00570 Genome accession   NZ_CP173025
Coordinates   116562..118049 (-) Length   495 a.a.
NCBI ID   WP_404229677.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111562..123049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS00550 (ACIHQS_00550) ppa 111892..112419 (+) 528 WP_004876306.1 inorganic diphosphatase -
  ACIHQS_RS00555 (ACIHQS_00555) - 112526..113851 (-) 1326 WP_007479696.1 OprD family outer membrane porin -
  ACIHQS_RS00560 (ACIHQS_00560) - 114593..115366 (+) 774 WP_404229674.1 TorF family putative porin -
  ACIHQS_RS00565 (ACIHQS_00565) - 115760..116521 (+) 762 WP_061517324.1 TorF family putative porin -
  ACIHQS_RS00570 (ACIHQS_00570) comM 116562..118049 (-) 1488 WP_404229677.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIHQS_RS00575 (ACIHQS_00575) - 118119..118346 (-) 228 WP_004876316.1 accessory factor UbiK family protein -
  ACIHQS_RS00580 (ACIHQS_00580) glnK 118622..118960 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  ACIHQS_RS00585 (ACIHQS_00585) - 119029..120435 (+) 1407 WP_004876320.1 ammonium transporter -
  ACIHQS_RS00590 (ACIHQS_00590) nrdR 120559..121023 (+) 465 WP_004876323.1 transcriptional regulator NrdR -
  ACIHQS_RS00595 (ACIHQS_00595) ribD 121036..122136 (+) 1101 WP_404229682.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54201.89 Da        Isoelectric Point: 7.0219

>NTDB_id=1069980 ACIHQS_RS00570 WP_404229677.1 116562..118049(-) (comM) [Acinetobacter venetianus strain AVYS1]
MSFAKIYTRGLLGLNAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTEGFEFIGELALDGHLRPVSGTLTIAMACQQAQHRLLLPISNVEEANQLPNFEVYAAQHL
QDVCAHFLGNSKIEAAPQRTETTSAGYQLDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLAA
HENLEVASIYSVANAQHTFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQATELQDRAETE
NSETVRQRVIKAYQQQLQRQQCLNQALSPNLLEQYALLDDNSTKIMAMAQQRLNLSARAYHRVLRVARTIADLSESEMIS
SSHLTEALSYRGHQA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1069980 ACIHQS_RS00570 WP_404229677.1 116562..118049(-) (comM) [Acinetobacter venetianus strain AVYS1]
ATGTCTTTTGCAAAAATCTATACGCGGGGATTATTGGGGCTGAATGCCCCTCAAATCGAGGTTGAAGTTCATATCAGTTC
AGGACTCCCATCTTTAACAATTGTCGGACTTCCAGAAGCAGCAGTCAGAGAAAGTAAAGATCGAGTCCGTTCAGCAATCA
TCAATAGTGGTTTTCAGTTTCCAACCAAGCGCTTAACAATCAATTTAGCACCCGCAGACTTACCAAAAGATGGCTCTCGA
CTCGATTTACCTATCGCTCTTGGCATCCTCGTTGCCTCAGGTCAACTACCTGAAAACTGCACGGAAGGATTTGAATTTAT
TGGTGAACTTGCACTAGATGGGCACCTAAGACCAGTGTCAGGTACTTTAACGATTGCCATGGCATGCCAACAAGCTCAAC
ATCGCCTATTACTACCAATATCAAATGTAGAAGAAGCCAATCAGTTACCAAACTTTGAGGTTTATGCTGCACAACATCTG
CAAGATGTTTGTGCACATTTTTTGGGCAATTCCAAGATAGAAGCCGCACCACAAAGAACAGAAACCACTTCTGCTGGCTA
TCAACTTGATCTTGCCGATGTAAAAGGACAATTGCGTCCTCGTCGAGCGCTAGAAATTGCGGCTGCGGGAGGACATTCAC
TATTATTTAAAGGGCCTCCAGGCACAGGGAAAACCTTACTCGCATCAAGATTACCCTCAATTTTGCCACCCTTAGCTGCC
CATGAAAATTTAGAAGTCGCAAGTATCTATTCGGTTGCAAATGCCCAACATACCTTTGGACAACGTCCATTTCGCGCCCC
GCACCACACAGCATCAGCCATCGCATTGGTGGGTGGCGGTTCACAGCCAAAACCGGGTGAAATTACCCTTGCACATTTAG
GTGTCTTATTTCTAGATGAGTTACCTGAGTTTGATCGAAAAGTGCTGGAAGTGCTGCGTCAGCCTTTAGAGTCCAAAGAA
ATTGTGATTTCACGCGCAGCAAGACAAATGACTTTTCCTGCAAATTTCCAGTTCATTGCTGCAATGAACCCTTGCCCTTG
TGGTTATGCATTCAACCAAGATAGTCGCTGTCAGTGCTCTCCAGAAAGTATTCAACGTTATCAAAATCGGATTTCAGGCC
CTTTGCTAGATCGAATTGATTTACATATTGATGTTCCGCCTTTGCAAGCCACTGAATTACAAGATCGAGCAGAAACTGAA
AACTCTGAAACTGTGCGACAACGCGTGATTAAAGCCTATCAACAACAACTACAAAGACAGCAATGTTTAAATCAAGCGTT
ATCACCAAACTTATTAGAGCAATATGCACTACTTGATGACAACTCAACAAAAATCATGGCAATGGCTCAACAACGTCTGA
ATCTCTCAGCTCGTGCTTATCATCGGGTTTTACGTGTCGCACGAACCATTGCTGATTTATCTGAGAGTGAAATGATTTCT
AGCTCACATTTAACAGAAGCATTGTCCTACCGAGGTCATCAGGCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.313

100

0.513
  comM Haemophilus influenzae Rd KW20

50.1

100

0.507
  comM Glaesserella parasuis strain SC1401

50

100

0.505
  comM Vibrio campbellii strain DS40M4

49.899

100

0.501
  comM Legionella pneumophila str. Paris

48.185

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.185

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.032

100

0.469

Multiple sequence alignment