Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACG2K1_RS04405 Genome accession   NZ_CP173024
Coordinates   866599..866925 (+) Length   108 a.a.
NCBI ID   WP_395429613.1    Uniprot ID   -
Organism   Neisseria sp. 23W00296     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861599..871925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2K1_RS04405 (ACG2K1_04405) comE 866599..866925 (+) 327 WP_395429613.1 ComEA family DNA-binding protein Machinery gene
  ACG2K1_RS04410 (ACG2K1_04410) - 867043..867900 (-) 858 WP_395429578.1 EamA family transporter -
  ACG2K1_RS04415 (ACG2K1_04415) - 868020..868682 (-) 663 WP_395429579.1 NAD(P)H-dependent oxidoreductase -
  ACG2K1_RS04420 (ACG2K1_04420) - 868790..869305 (+) 516 WP_395429580.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACG2K1_RS04425 (ACG2K1_04425) - 869589..870404 (-) 816 WP_395429581.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  ACG2K1_RS04430 (ACG2K1_04430) recX 870592..871059 (-) 468 WP_395429589.1 recombination regulator RecX Regulator

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 10939.79 Da        Isoelectric Point: 10.4122

>NTDB_id=1069950 ACG2K1_RS04405 WP_395429613.1 866599..866925(+) (comE) [Neisseria sp. 23W00296]
MKKILFGLAAYALAALAAAAVNINTATVEELKALPGIGPAKAQAIADYRKENGDFKSVEDLKKVKGIGEGIFGKLKDEAT
VGSSPNAKAAKPAAPAAKNVPPAPAAKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1069950 ACG2K1_RS04405 WP_395429613.1 866599..866925(+) (comE) [Neisseria sp. 23W00296]
ATGAAGAAAATCCTGTTCGGATTGGCAGCCTATGCGCTGGCGGCTCTGGCCGCCGCTGCGGTTAATATCAATACGGCAAC
GGTGGAGGAGCTGAAAGCCCTGCCGGGCATCGGCCCGGCCAAAGCCCAGGCCATTGCCGACTACCGTAAGGAAAACGGTG
ATTTCAAATCGGTTGAGGATTTGAAAAAGGTCAAAGGCATCGGCGAGGGTATCTTCGGCAAGCTCAAGGATGAGGCTACC
GTCGGTTCCTCACCCAATGCCAAAGCAGCCAAACCCGCCGCACCTGCCGCCAAAAACGTACCGCCCGCTCCCGCCGCCAA
AAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56.122

90.741

0.509
  comE Neisseria gonorrhoeae MS11

56.122

90.741

0.509
  comE Neisseria gonorrhoeae MS11

56.122

90.741

0.509
  comE Neisseria gonorrhoeae MS11

56.122

90.741

0.509
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.025

75

0.435
  comEA Vibrio parahaemolyticus RIMD 2210633

46.667

83.333

0.389

Multiple sequence alignment