Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AADG46_RS12105 Genome accession   NZ_AP028804
Coordinates   2648529..2650052 (-) Length   507 a.a.
NCBI ID   WP_340701823.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2643529..2655052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS12080 (VNVC001_22840) - 2643703..2643969 (+) 267 WP_000649654.1 YihD family protein -
  AADG46_RS12085 (VNVC001_22850) ccoG 2644386..2645810 (+) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  AADG46_RS12090 (VNVC001_22860) - 2645858..2646844 (+) 987 WP_340702005.1 serine/threonine protein kinase -
  AADG46_RS12095 (VNVC001_22870) - 2646875..2647477 (+) 603 WP_340701822.1 thiol:disulfide interchange protein DsbA/DsbL -
  AADG46_RS12100 (VNVC001_22880) - 2647555..2648439 (-) 885 WP_000881901.1 acyltransferase -
  AADG46_RS12105 (VNVC001_22890) comM 2648529..2650052 (-) 1524 WP_340701823.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AADG46_RS12110 (VNVC001_22900) ilvG 2650586..2652232 (+) 1647 WP_340701824.1 acetolactate synthase 2 catalytic subunit -
  AADG46_RS12115 (VNVC001_22910) ilvM 2652244..2652528 (+) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  AADG46_RS12120 (VNVC001_22920) ilvE 2652540..2653478 (+) 939 WP_000201999.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55049.15 Da        Isoelectric Point: 8.6160

>NTDB_id=106930 AADG46_RS12105 WP_340701823.1 2648529..2650052(-) (comM) [Vibrio cholerae strain VN152]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVQRCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQALSLFQSSPSVQQVSQTRDLQDIIGQQQGKRSLEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=106930 AADG46_RS12105 WP_340701823.1 2648529..2650052(-) (comM) [Vibrio cholerae strain VN152]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCTGAAACCACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAGGGTGTATTGCCTGCCGCGCTCGCGGCTAACCAAGTGCAGC
GCTGTTTGGTGGTCCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAGCTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTAAGTCA
GACGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGATCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCTGGTGAAATTTCTCTCG
CCCATAATGGGTTACTATTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTACTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTTTGGAAAGTGCGCTGCATC
GCTTGGGTTTATCGATTCGGGCTTACCATCGGATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAAAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.211

100

0.992
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

63.953

100

0.651
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.026

100

0.432

Multiple sequence alignment