Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AADG46_RS00550 | Genome accession | NZ_AP028804 |
| Coordinates | 104752..105285 (+) | Length | 177 a.a. |
| NCBI ID | WP_000168287.1 | Uniprot ID | A0A2A1YRC3 |
| Organism | Vibrio cholerae strain VN152 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 99752..110285
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG46_RS00535 (VNVC001_00730) | uvrA | 99795..102617 (-) | 2823 | WP_156845991.1 | excinuclease ABC subunit UvrA | - |
| AADG46_RS00540 (VNVC001_00740) | galU | 102771..103643 (-) | 873 | WP_162808139.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AADG46_RS00545 (VNVC001_00750) | qstR | 103816..104460 (-) | 645 | WP_001188318.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AADG46_RS00550 (VNVC001_00760) | ssb | 104752..105285 (+) | 534 | WP_000168287.1 | single-stranded DNA-binding protein | Machinery gene |
| AADG46_RS00555 (VNVC001_00770) | csrD | 105463..107421 (+) | 1959 | WP_233358186.1 | RNase E specificity factor CsrD | - |
| AADG46_RS00560 (VNVC001_00780) | - | 107434..108873 (+) | 1440 | WP_000743255.1 | PilN domain-containing protein | - |
| AADG46_RS00565 (VNVC001_00790) | gspM | 108870..109520 (+) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| AADG46_RS00570 (VNVC001_00800) | - | 109513..109830 (+) | 318 | WP_001887862.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19644.85 Da Isoelectric Point: 5.7626
>NTDB_id=106894 AADG46_RS00550 WP_000168287.1 104752..105285(+) (ssb) [Vibrio cholerae strain VN152]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=106894 AADG46_RS00550 WP_000168287.1 104752..105285(+) (ssb) [Vibrio cholerae strain VN152]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
99.435 |
100 |
0.994 |
| ssb | Glaesserella parasuis strain SC1401 |
52.198 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |