Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AADG46_RS00545 Genome accession   NZ_AP028804
Coordinates   103816..104460 (-) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain VN152     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 98816..109460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS00535 (VNVC001_00730) uvrA 99795..102617 (-) 2823 WP_156845991.1 excinuclease ABC subunit UvrA -
  AADG46_RS00540 (VNVC001_00740) galU 102771..103643 (-) 873 WP_162808139.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AADG46_RS00545 (VNVC001_00750) qstR 103816..104460 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  AADG46_RS00550 (VNVC001_00760) ssb 104752..105285 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  AADG46_RS00555 (VNVC001_00770) csrD 105463..107421 (+) 1959 WP_233358186.1 RNase E specificity factor CsrD -
  AADG46_RS00560 (VNVC001_00780) - 107434..108873 (+) 1440 WP_000743255.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=106893 AADG46_RS00545 WP_001188318.1 103816..104460(-) (qstR) [Vibrio cholerae strain VN152]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=106893 AADG46_RS00545 WP_001188318.1 103816..104460(-) (qstR) [Vibrio cholerae strain VN152]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment