Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAM51_RS15175 Genome accession   NZ_AP028672
Coordinates   3316860..3318404 (-) Length   514 a.a.
NCBI ID   WP_218296612.1    Uniprot ID   -
Organism   Acidovorax sp. A79     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3311860..3323404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM51_RS15155 (GmRootA79_30090) - 3312026..3313246 (+) 1221 WP_369641099.1 thiolase family protein -
  ACAM51_RS15160 (GmRootA79_30100) - 3313249..3314517 (+) 1269 WP_369641100.1 acetyl-CoA C-acyltransferase -
  ACAM51_RS15165 (GmRootA79_30110) - 3314600..3316174 (+) 1575 WP_369641101.1 acyl CoA:acetate/3-ketoacid CoA transferase -
  ACAM51_RS15170 (GmRootA79_30120) - 3316204..3316704 (-) 501 WP_369641102.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAM51_RS15175 (GmRootA79_30130) comM 3316860..3318404 (-) 1545 WP_218296612.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAM51_RS15180 (GmRootA79_30140) - 3318623..3319354 (+) 732 WP_218296613.1 TorF family putative porin -
  ACAM51_RS15185 (GmRootA79_30150) glnK 3319402..3319740 (+) 339 WP_010466918.1 P-II family nitrogen regulator -
  ACAM51_RS15190 (GmRootA79_30160) amt 3319777..3321321 (+) 1545 WP_369641103.1 ammonium transporter -
  ACAM51_RS15195 (GmRootA79_30170) glcE 3321598..3322734 (+) 1137 WP_369641104.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 53814.70 Da        Isoelectric Point: 8.2247

>NTDB_id=106861 ACAM51_RS15175 WP_218296612.1 3316860..3318404(-) (comM) [Acidovorax sp. A79]
MSLALVQSRALLGLQAPSVTVEVHLANGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQLDGARLPGHEFAGELSLSGELRPVRGALATSLALQTQQISAVLVLPPGSAEEAALVPAAQVVRA
RHLLDVVRAFLPPGSAAAGDASVDNDGWTRLQATPMAAAAASLDMADVKGQATAKRALEIAAAGAHSVLMAGPPGSGKSM
LALRFAGLLPAMTVDEALESAAIASLAGRFRPELWGQRPTGTPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELPEF
PRAALEALREPLETGHITISRAAQRADFPARFQMIAAMNPCPCGFLGSTQRACRCTPDQINRYQGKLSGPLLDRIDLHVE
VPALPAEQLVQAPAGEPTAAIRGRVEHARALALARQGKANQALQGQEIDTHLRLDDAAARFLNTAAARLGWSARSTHRAL
KVARTIADLAGSPTTEVIHVAEAVQYRRVLRSPA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=106861 ACAM51_RS15175 WP_218296612.1 3316860..3318404(-) (comM) [Acidovorax sp. A79]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTTCTGGGGCTGCAGGCGCCGTCCGTCACTGTCGAAGTGCACCTGGCCAA
CGGCCTGCCCAGCTTCACCCTGGTGGGCCTTGCCGAAGTGGAAGTGAAGGAAGCGCGCGAGCGCGTGCGGTCGGCACTGC
AGAACGCGGGGCTGGAGTTCCCCCACAACAAGCGGATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAGGATTCCGGC
CGGTTCGACCTGCCGATCGCGCTGGGCATCCTGGCGGCCAGCGGGCAGCTGGACGGCGCCCGCCTGCCGGGGCACGAATT
CGCGGGCGAGCTGTCGCTGTCGGGCGAACTGCGGCCGGTGCGCGGCGCGCTGGCCACGAGCCTCGCGCTGCAGACGCAGC
AGATCAGCGCCGTGCTGGTGCTGCCGCCCGGCAGCGCCGAAGAGGCCGCCCTCGTGCCCGCCGCGCAGGTGGTGCGCGCC
CGGCACCTGCTGGACGTGGTGCGCGCCTTCCTGCCACCGGGCAGCGCCGCGGCGGGCGATGCCTCCGTGGACAACGATGG
CTGGACCCGCCTGCAAGCCACGCCGATGGCGGCCGCAGCCGCCTCCCTGGACATGGCCGACGTGAAAGGCCAGGCCACGG
CCAAGCGCGCGCTGGAGATCGCGGCCGCCGGAGCCCACAGTGTCCTGATGGCCGGCCCGCCGGGCTCGGGCAAGTCCATG
CTGGCCCTGCGCTTTGCCGGGCTGCTGCCGGCCATGACGGTGGACGAGGCGCTGGAGAGCGCAGCGATCGCCAGCCTGGC
CGGGCGGTTCCGCCCCGAACTGTGGGGGCAACGGCCCACGGGCACGCCCCACCATACGGCCAGCGCGGTGGCCCTTGTCG
GAGGTGGATCGCCGCCCCGGCCGGGCGAAATCTCGCTGGCCCACCACGGCGTCCTCTTCCTCGACGAGCTGCCGGAATTT
CCCCGCGCCGCCCTCGAGGCGCTGCGCGAGCCGCTGGAGACGGGCCACATCACCATCTCGCGGGCCGCGCAGCGCGCGGA
CTTCCCCGCGCGCTTTCAGATGATCGCGGCGATGAACCCCTGCCCGTGCGGCTTTCTCGGGTCCACGCAACGCGCGTGCC
GCTGCACGCCCGACCAGATCAACCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAG
GTGCCCGCCCTCCCCGCCGAGCAACTGGTGCAGGCCCCCGCGGGCGAGCCCACCGCCGCCATCCGCGGGCGGGTGGAACA
TGCCCGCGCCCTGGCGCTGGCGCGGCAGGGCAAGGCCAACCAGGCGTTGCAGGGCCAGGAGATCGACACGCACCTGCGGC
TGGACGATGCGGCCGCCAGATTCCTGAACACCGCCGCCGCGCGGCTGGGATGGTCGGCCCGCAGCACGCACCGTGCGCTG
AAGGTGGCGCGCACCATCGCCGACCTGGCGGGCTCGCCCACCACCGAGGTCATCCATGTGGCCGAGGCCGTGCAATACCG
CCGCGTGCTGCGCAGCCCCGCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.039

100

0.521
  comM Vibrio cholerae strain A1552

51.751

100

0.518
  comM Haemophilus influenzae Rd KW20

51.351

100

0.518
  comM Glaesserella parasuis strain SC1401

51.373

99.222

0.51
  comM Legionella pneumophila str. Paris

49.136

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.136

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.86

100

0.42

Multiple sequence alignment