Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAM43_RS29140 Genome accession   NZ_AP028671
Coordinates   6272521..6274059 (-) Length   512 a.a.
NCBI ID   WP_369630883.1    Uniprot ID   -
Organism   Variovorax sp. V77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6267521..6279059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM43_RS29130 (GmRootV77_57690) tagF 6269773..6270498 (+) 726 WP_062473933.1 type VI secretion system-associated protein TagF -
  ACAM43_RS29135 (GmRootV77_57700) - 6270535..6272508 (+) 1974 WP_369630882.1 serine/threonine-protein kinase -
  ACAM43_RS29140 (GmRootV77_57710) comM 6272521..6274059 (-) 1539 WP_369630883.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAM43_RS29145 (GmRootV77_57720) - 6274277..6275143 (+) 867 WP_062482029.1 TorF family putative porin -
  ACAM43_RS29150 (GmRootV77_57730) glnK 6275214..6275552 (+) 339 WP_056583732.1 P-II family nitrogen regulator -
  ACAM43_RS29155 (GmRootV77_57740) - 6275582..6277015 (+) 1434 WP_369630884.1 ammonium transporter -
  ACAM43_RS29160 (GmRootV77_57750) - 6277221..6278150 (+) 930 WP_369630885.1 SMP-30/gluconolactonase/LRE family protein -
  ACAM43_RS29165 (GmRootV77_57760) - 6278169..6279056 (+) 888 WP_062482020.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53816.42 Da        Isoelectric Point: 8.5149

>NTDB_id=106851 ACAM43_RS29140 WP_369630883.1 6272521..6274059(-) (comM) [Variovorax sp. V77]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPTNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIENARLAGHEFAGELSLSGELRPVRGALAMAVATYTQGTAVRLVLPLDSAQEAALVPGAQVYGA
RHLLDVVRQFVASGGGPVDASDDGWTHVRAAPGDGAPRYADLADVKGHTGAKRALEIAAAGGHSLLMVGEPGSGKSMLAH
RFAGLLPPMNVDEALESAAIASLDGRLAPERWMSRPTATPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFTRA
ALEALREPLETGTITITRAARRAEFPARFQLIAAMNPCPCGYLGSTLKPCRCTPERIARYQGKLSGPLLDRIDLHIEVAA
VSAPQLLDAPAGESTDSIRARVVGARDRALQRQGHANQALQGRAIDTHAMLDGPARQLLQQAAARLGWSARSTHRALKVA
RTIADLAGQDAVQAAHVAEAVQYRRALRTGTP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=106851 ACAM43_RS29140 WP_369630883.1 6272521..6274059(-) (comM) [Variovorax sp. V77]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGCCTGGAGGCCGCCGCCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTGGTCGGGCTGGCCGAGACCGAGGTCAAGGAGGCGCGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGGCTCGAATTTCCGACCAACAAGAAGATCGTGGTCAATCTGGCGCCCGCCGACCTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCCATCGCGCTGGGCATCCTCGCGGCCAGCGGGCAGATCGAGAACGCCCGCCTCGCCGGCCACGAGTT
CGCCGGTGAGCTGTCGCTGTCGGGCGAACTGCGCCCCGTGCGCGGCGCGCTGGCGATGGCCGTGGCCACCTACACGCAAG
GCACGGCCGTGCGGCTGGTGCTGCCCCTGGACAGCGCGCAAGAGGCCGCGCTGGTGCCCGGTGCGCAGGTGTACGGCGCC
CGGCACCTGCTCGACGTGGTGCGCCAGTTCGTCGCCAGCGGCGGCGGGCCGGTCGACGCGAGCGACGACGGCTGGACCCA
CGTGCGCGCCGCGCCCGGCGACGGCGCCCCGCGCTATGCCGACCTGGCCGACGTCAAGGGCCACACCGGCGCCAAGCGCG
CCCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGCTCATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATGCTGGCGCAC
CGCTTCGCCGGCCTGCTGCCGCCGATGAACGTGGACGAGGCACTGGAAAGCGCGGCCATCGCCAGCCTCGACGGCCGGCT
GGCGCCCGAGCGCTGGATGAGCCGCCCGACGGCCACGCCGCACCACACGGCGAGCGCGGTGGCGCTGGTGGGCGGCGGCT
CGCCGCCCCGGCCGGGCGAGATCTCGCGCGCGCACCACGGCGTGCTGTTTCTCGACGAGTTCCCCGAGTTCACGCGCGCC
GCACTCGAAGCCCTGCGCGAGCCGCTGGAGACCGGCACCATCACGATCACCCGCGCCGCCCGGCGCGCGGAGTTTCCGGC
CCGCTTCCAGCTCATCGCCGCGATGAACCCCTGCCCCTGCGGCTACCTCGGCTCCACGCTCAAGCCCTGCCGCTGCACGC
CCGAGCGCATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAGGTGGCGGCC
GTGTCGGCGCCGCAGCTGCTCGACGCGCCGGCAGGCGAATCGACCGACAGCATCCGCGCGCGCGTGGTGGGCGCACGCGA
CCGCGCGCTGCAACGCCAGGGCCACGCGAACCAGGCGCTGCAGGGCCGCGCGATCGACACGCACGCCATGCTCGACGGCC
CCGCCCGCCAGCTGCTGCAGCAGGCGGCCGCGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAGGTGGCG
CGCACCATCGCCGACCTCGCGGGGCAGGACGCGGTGCAGGCCGCGCATGTGGCGGAGGCGGTGCAGTACCGCCGCGCATT
GCGCACCGGCACGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50

98.828

0.494
  comM Vibrio campbellii strain DS40M4

49.012

98.828

0.484
  comM Glaesserella parasuis strain SC1401

48.622

99.219

0.482
  comM Legionella pneumophila strain ERS1305867

48.141

99.805

0.48
  comM Legionella pneumophila str. Paris

48.141

99.805

0.48
  comM Haemophilus influenzae Rd KW20

47.647

99.609

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.08

100

0.432

Multiple sequence alignment