Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACFMPA_RS12510 Genome accession   NZ_CP172605
Coordinates   2449040..2449336 (-) Length   98 a.a.
NCBI ID   WP_014477332.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2444040..2454336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS12465 (ACFMPA_12465) tasA 2444447..2445232 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  ACFMPA_RS12470 (ACFMPA_12470) sipW 2445296..2445868 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ACFMPA_RS12475 (ACFMPA_12475) tapA 2445852..2446613 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  ACFMPA_RS12480 (ACFMPA_12480) - 2446885..2447211 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACFMPA_RS12485 (ACFMPA_12485) - 2447253..2447432 (-) 180 WP_014480252.1 YqzE family protein -
  ACFMPA_RS12490 (ACFMPA_12490) comGG 2447504..2447878 (-) 375 WP_033884701.1 ComG operon protein ComGG Machinery gene
  ACFMPA_RS12495 (ACFMPA_12495) comGF 2447879..2448262 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  ACFMPA_RS12500 (ACFMPA_12500) comGE 2448288..2448635 (-) 348 WP_033884703.1 ComG operon protein 5 Machinery gene
  ACFMPA_RS12505 (ACFMPA_12505) comGD 2448619..2449050 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  ACFMPA_RS12510 (ACFMPA_12510) comGC 2449040..2449336 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  ACFMPA_RS12515 (ACFMPA_12515) comGB 2449350..2450387 (-) 1038 WP_033884704.1 comG operon protein ComGB Machinery gene
  ACFMPA_RS12520 (ACFMPA_12520) comGA 2450374..2451444 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  ACFMPA_RS12525 (ACFMPA_12525) - 2451672..2451854 (-) 183 WP_033884706.1 hypothetical protein -
  ACFMPA_RS12530 (ACFMPA_12530) corA 2451856..2452809 (-) 954 WP_004399136.1 magnesium transporter CorA -
  ACFMPA_RS12535 (ACFMPA_12535) - 2452952..2454280 (+) 1329 WP_033884708.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10830.69 Da        Isoelectric Point: 6.4730

>NTDB_id=1068230 ACFMPA_RS12510 WP_014477332.1 2449040..2449336(-) (comGC) [Bacillus sp. SG20032]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1068230 ACFMPA_RS12510 WP_014477332.1 2449040..2449336(-) (comGC) [Bacillus sp. SG20032]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment