Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM54_RS02155 Genome accession   NZ_AP028669
Coordinates   480432..480974 (+) Length   180 a.a.
NCBI ID   WP_145742684.1    Uniprot ID   -
Organism   Variovorax sp. V93     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 475432..485974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM54_RS02145 (GmRootV93_04280) uvrA 475797..478913 (-) 3117 WP_369649681.1 excinuclease ABC subunit UvrA -
  ACAM54_RS02150 (GmRootV93_04290) - 478932..480323 (-) 1392 WP_369649682.1 chloride channel protein -
  ACAM54_RS02155 (GmRootV93_04300) ssb 480432..480974 (+) 543 WP_145742684.1 single-stranded DNA-binding protein Machinery gene
  ACAM54_RS02160 (GmRootV93_04310) - 481094..483070 (+) 1977 WP_369649683.1 sensor histidine kinase -
  ACAM54_RS02165 (GmRootV93_04320) - 483083..483523 (-) 441 WP_369649684.1 GFA family protein -
  ACAM54_RS02170 (GmRootV93_04330) - 483542..484255 (-) 714 WP_369649685.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACAM54_RS02175 (GmRootV93_04340) - 484614..484994 (+) 381 WP_369649686.1 helicase SNF2 -
  ACAM54_RS02180 (GmRootV93_04350) - 485357..485956 (+) 600 WP_369649687.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19139.07 Da        Isoelectric Point: 5.9554

>NTDB_id=106819 ACAM54_RS02155 WP_145742684.1 480432..480974(+) (ssb) [Variovorax sp. V93]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGYSQGGGGGGGGYAPRAPAAAPRAPAPAP
RQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=106819 ACAM54_RS02155 WP_145742684.1 480432..480974(+) (ssb) [Variovorax sp. V93]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCAAATGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACTGAATGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATTGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGCCCCTCGGGCGGTCCCGAGGACGACGGCGGCTATTCGCAGGGCGGCGGCTACT
CGCAAGGCGGCGGTGGTGGTGGCGGCGGCTACGCCCCCCGTGCACCGGCCGCGGCACCGCGCGCTCCGGCGCCGGCACCG
CGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.88

100

0.561
  ssb Vibrio cholerae strain A1552

46.429

100

0.506
  ssb Neisseria gonorrhoeae MS11

47.191

98.889

0.467
  ssb Neisseria meningitidis MC58

46.067

98.889

0.456

Multiple sequence alignment