Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACG2XO_RS05320 Genome accession   NZ_CP172558
Coordinates   1095721..1097220 (+) Length   499 a.a.
NCBI ID   WP_410499784.1    Uniprot ID   -
Organism   Chitinibacter sp. S2-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1090721..1102220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2XO_RS05290 (ACG2XO_05290) - 1090851..1092047 (+) 1197 WP_410499779.1 acetate/propionate family kinase -
  ACG2XO_RS05295 (ACG2XO_05295) - 1092283..1093038 (+) 756 WP_410499780.1 BPSS1780 family membrane protein -
  ACG2XO_RS05300 (ACG2XO_05300) - 1093029..1093406 (+) 378 WP_410500229.1 diacylglycerol kinase -
  ACG2XO_RS05305 (ACG2XO_05305) - 1093476..1093886 (-) 411 WP_410499781.1 DUF2721 domain-containing protein -
  ACG2XO_RS05310 (ACG2XO_05310) - 1093876..1094652 (-) 777 WP_410499782.1 LytR/AlgR family response regulator transcription factor -
  ACG2XO_RS05315 (ACG2XO_05315) - 1094621..1095649 (-) 1029 WP_410499783.1 sensor histidine kinase -
  ACG2XO_RS05320 (ACG2XO_05320) comM 1095721..1097220 (+) 1500 WP_410499784.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACG2XO_RS05325 (ACG2XO_05325) - 1097344..1099395 (-) 2052 WP_410499785.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  ACG2XO_RS05330 (ACG2XO_05330) - 1099392..1100309 (-) 918 WP_410499786.1 HDOD domain-containing protein -
  ACG2XO_RS05335 (ACG2XO_05335) - 1100458..1101405 (-) 948 WP_410499787.1 LysR substrate-binding domain-containing protein -
  ACG2XO_RS05340 (ACG2XO_05340) - 1101510..1101779 (+) 270 WP_410499788.1 DUF2917 domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53388.97 Da        Isoelectric Point: 7.8215

>NTDB_id=1068030 ACG2XO_RS05320 WP_410499784.1 1095721..1097220(+) (comM) [Chitinibacter sp. S2-10]
MSLAVLFSRALDGMQAQLVSVEVHLANGLPAFNLVGLADTEVREARERVRAAIQVAGFEFPARRITVNLAPADLPKGAGH
YDLAIAIGILAASGQMPSDKLAEYEFAGELGLTGQLRAIRGGLALAMAARDAGRTLVISQSSAAEAALIRDAAVLAAEHL
LEVCQHFSAESSSTLSFAQASQTHSSPVYPDLADVKGQLPARRALEIAAAGNHSLLLIGPPGTGKSMLAQRLPGLLPPLN
ETEALEAATIQSLSAKGLDPAQFGYRSFRAPHHTASSVALVGGGSIPQPGEISLAHHGVLFLDELPEYDRKVLEVLREPL
ENGKIHISRAARQAEFPAQFQLVAAMNPCPCGYRGHPKKACRCTPEQIARYRGRISGPLLDRIDMVVEVGALPDEVLFSR
QAGEASLSVRERVAQARRRQHTRQGKHNAALNSQAVDEYCQLDATGLALLQKAVSQLAWSARAYHRVLRVARTVADLAAS
EHISSQHIAEAIQYRRGIE

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1068030 ACG2XO_RS05320 WP_410499784.1 1095721..1097220(+) (comM) [Chitinibacter sp. S2-10]
ATGTCATTGGCAGTCCTGTTTTCTCGCGCACTTGATGGTATGCAGGCACAACTGGTCAGCGTCGAGGTTCATTTGGCCAA
CGGACTTCCTGCATTCAATCTGGTCGGCTTGGCCGATACAGAGGTACGCGAAGCGCGCGAGCGGGTACGGGCCGCCATTC
AAGTCGCCGGATTTGAGTTTCCAGCCCGAAGAATTACTGTCAACCTCGCGCCTGCCGATTTGCCCAAAGGTGCCGGACAT
TATGATCTGGCCATCGCCATCGGTATTCTAGCTGCCAGCGGACAAATGCCGTCGGACAAACTGGCTGAATATGAATTTGC
CGGCGAATTGGGGCTTACCGGTCAATTGCGAGCCATCCGCGGCGGGCTGGCTTTGGCCATGGCGGCTCGCGATGCGGGGC
GAACGCTGGTCATCAGCCAGAGCAGCGCGGCCGAAGCGGCGCTTATCCGAGATGCCGCCGTACTGGCAGCCGAACATTTG
CTTGAAGTCTGTCAGCACTTTAGCGCCGAATCGTCTAGCACACTGTCATTCGCCCAAGCGTCCCAAACTCATTCATCCCC
TGTCTATCCTGATCTGGCCGATGTCAAAGGCCAGCTTCCGGCACGGCGGGCGTTGGAAATCGCTGCAGCGGGTAATCATT
CATTACTGCTAATCGGCCCACCAGGGACTGGTAAATCGATGCTGGCACAACGCTTACCCGGCTTATTACCGCCTTTAAAC
GAAACCGAGGCACTTGAAGCGGCAACAATACAATCTCTGAGTGCCAAGGGGCTCGACCCTGCTCAATTCGGATACCGCTC
TTTTCGTGCACCGCACCATACAGCATCGAGTGTTGCACTGGTTGGGGGTGGCAGTATTCCGCAACCTGGCGAAATTTCAC
TGGCGCACCACGGCGTGCTGTTTCTCGATGAATTACCCGAATATGACCGTAAAGTACTGGAAGTGCTGCGCGAGCCGCTG
GAAAACGGCAAAATTCATATCTCCCGCGCAGCGCGACAGGCCGAGTTTCCGGCGCAATTTCAGCTGGTCGCGGCGATGAA
TCCTTGTCCTTGCGGCTATCGCGGCCACCCGAAAAAAGCCTGCCGCTGCACCCCCGAGCAGATCGCCCGTTACCGCGGCC
GCATTTCAGGCCCCTTGCTCGACCGGATTGATATGGTTGTCGAAGTCGGAGCGCTGCCCGACGAAGTTTTGTTCAGCCGA
CAGGCAGGCGAAGCCAGTTTGTCGGTCAGGGAGCGTGTCGCACAGGCGCGAAGGCGTCAGCATACCCGTCAGGGCAAGCA
TAACGCCGCATTGAATAGCCAGGCCGTCGACGAATATTGCCAGCTTGATGCAACAGGGTTGGCCTTATTGCAAAAAGCGG
TCAGCCAATTGGCCTGGTCGGCGCGCGCTTACCATCGGGTTTTACGCGTAGCGCGCACAGTGGCCGATCTGGCTGCCAGC
GAACACATCTCCAGCCAGCACATTGCCGAAGCGATTCAATACCGACGCGGAATCGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.697

100

0.519
  comM Vibrio campbellii strain DS40M4

51.308

99.599

0.511
  comM Haemophilus influenzae Rd KW20

51.102

100

0.511
  comM Legionella pneumophila strain ERS1305867

49.705

100

0.507
  comM Legionella pneumophila str. Paris

49.705

100

0.507
  comM Glaesserella parasuis strain SC1401

49.8

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.223

100

0.445

Multiple sequence alignment