Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACG1BZ_RS01015 Genome accession   NZ_CP172449
Coordinates   215611..217101 (-) Length   496 a.a.
NCBI ID   WP_413664041.1    Uniprot ID   -
Organism   Microbulbifer sp. CNSA002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210611..222101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG1BZ_RS00980 (ACG1BZ_00980) - 211015..211572 (+) 558 WP_413664035.1 GNAT family N-acetyltransferase -
  ACG1BZ_RS00985 (ACG1BZ_00985) - 211718..212668 (+) 951 WP_413664036.1 alpha/beta hydrolase family protein -
  ACG1BZ_RS00990 (ACG1BZ_00990) bla 212684..213550 (+) 867 WP_413665825.1 subclass B3 metallo-beta-lactamase -
  ACG1BZ_RS00995 (ACG1BZ_00995) - 213582..213779 (-) 198 WP_413664037.1 hypothetical protein -
  ACG1BZ_RS01000 (ACG1BZ_01000) - 213776..214219 (-) 444 WP_413664038.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACG1BZ_RS01005 (ACG1BZ_01005) - 214227..214514 (-) 288 WP_413664039.1 putative quinol monooxygenase -
  ACG1BZ_RS01010 (ACG1BZ_01010) - 214824..215525 (+) 702 WP_413664040.1 YopT-type cysteine protease domain-containing protein -
  ACG1BZ_RS01015 (ACG1BZ_01015) comM 215611..217101 (-) 1491 WP_413664041.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACG1BZ_RS01020 (ACG1BZ_01020) - 217131..217373 (-) 243 WP_108735120.1 accessory factor UbiK family protein -
  ACG1BZ_RS01025 (ACG1BZ_01025) - 217800..218525 (+) 726 WP_413664042.1 TorF family putative porin -
  ACG1BZ_RS01030 (ACG1BZ_01030) - 218578..218916 (+) 339 WP_413664043.1 P-II family nitrogen regulator -
  ACG1BZ_RS01035 (ACG1BZ_01035) - 218971..220230 (+) 1260 WP_413664044.1 ammonium transporter -
  ACG1BZ_RS01040 (ACG1BZ_01040) - 220318..220656 (+) 339 WP_108731383.1 P-II family nitrogen regulator -
  ACG1BZ_RS01045 (ACG1BZ_01045) - 221040..221264 (+) 225 WP_108731384.1 hypothetical protein -
  ACG1BZ_RS01050 (ACG1BZ_01050) - 221331..222068 (-) 738 WP_413664045.1 DUF484 family protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53600.05 Da        Isoelectric Point: 7.1623

>NTDB_id=1067883 ACG1BZ_RS01015 WP_413664041.1 215611..217101(-) (comM) [Microbulbifer sp. CNSA002]
MSLSVTYSRAQLGVSAPLVTVETHLANGLPAFHIVGLPEAAVRESRDRVRSALINSHFDFPQRRITVNLAPADLPKEGGR
YDLAIAIGILSASGQVPTETLERYEFIGELALTGALREVSGSLPAAVACTNEDRKLVVPTENGAEAALATGEVSIANSLL
EVCAELHGRESMPKAVTEPIAEEHLCADLADVRGQLKARRALEVAAAGSHNLLFYGPPGTGKTMLASRLPGILPPLTTEE
SLEVASVYSSAGLPHQSLRPFRAPHHSASPTALVGGGSTPRPGEISLAHRGVLFLDEMPEFPRHALEILREPLENGEVRI
SRARAQVTYPAHFQLVGAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVGAMNAVQLQDSAPGETSDTV
RERVCAARQQQIQRQGKTNNLLKGAELEKHCALGEKEKHLLRQSVEKLGLSARSYHRVLKVARTLADLANSERISTTQIA
EALAYRNLDRRQTATA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1067883 ACG1BZ_RS01015 WP_413664041.1 215611..217101(-) (comM) [Microbulbifer sp. CNSA002]
GTGAGCCTCTCAGTCACCTACTCCCGAGCTCAGCTCGGGGTCTCTGCACCTCTGGTTACCGTAGAAACCCACCTGGCAAA
TGGACTCCCTGCTTTTCATATTGTGGGTTTACCGGAAGCGGCGGTGCGGGAGAGCCGCGACCGTGTGCGCAGCGCCCTAA
TCAACAGCCATTTCGACTTCCCCCAGCGCCGTATTACCGTCAACCTCGCCCCCGCCGACTTACCCAAGGAAGGTGGCCGC
TACGATCTGGCCATCGCCATCGGTATTCTCAGTGCCTCGGGACAGGTTCCCACCGAAACTCTGGAACGCTATGAATTTAT
TGGCGAGCTAGCACTCACCGGCGCCTTGCGGGAAGTAAGTGGTAGCTTACCGGCAGCCGTGGCCTGCACCAATGAAGACC
GTAAACTCGTTGTGCCTACCGAGAACGGTGCGGAAGCCGCGCTGGCAACCGGCGAAGTCAGCATTGCCAACTCCCTACTG
GAAGTTTGCGCCGAACTTCATGGGCGTGAATCTATGCCCAAAGCTGTTACAGAGCCTATTGCCGAAGAGCACCTGTGCGC
AGACTTAGCCGATGTGCGCGGCCAACTAAAGGCCCGCCGCGCTCTCGAAGTGGCAGCAGCCGGGAGCCACAATCTGCTTT
TTTACGGTCCGCCCGGCACCGGCAAAACCATGCTGGCCAGCCGCCTGCCAGGAATATTGCCCCCGCTGACAACTGAAGAG
TCACTAGAGGTAGCGAGCGTTTACTCCAGCGCAGGCCTACCTCACCAGAGCCTGCGCCCTTTCAGGGCCCCACACCACAG
CGCCTCCCCAACAGCGCTGGTCGGTGGGGGCAGTACTCCACGGCCCGGTGAGATATCCCTCGCGCACCGGGGAGTCCTAT
TCCTTGATGAGATGCCCGAATTTCCCAGGCACGCCCTGGAGATACTGCGGGAACCCCTGGAGAATGGTGAAGTGCGTATC
TCCCGCGCCCGAGCCCAAGTCACCTACCCCGCCCACTTTCAGCTGGTCGGGGCTATGAACCCCTGCCCTTGTGGCTATTT
AGGCGAACCCCGCTGTCGCTGTACCCCAGACCAGATAGATCGATATCGTAACAAGCTCTCAGGCCCTCTGCTGGATCGTA
TCGATATGCAGGTAGAGGTGGGCGCTATGAATGCTGTGCAATTACAGGATTCAGCTCCCGGAGAAACTTCCGATACCGTG
AGAGAGAGAGTTTGTGCCGCACGCCAGCAACAAATACAGCGGCAAGGTAAGACAAATAACCTGTTAAAAGGCGCAGAGCT
GGAAAAGCACTGTGCCTTGGGGGAAAAGGAGAAACACCTCTTACGTCAATCGGTGGAAAAACTGGGGCTATCCGCGCGTA
GTTACCATCGGGTCCTTAAAGTAGCCCGAACCTTGGCAGACCTTGCTAATTCTGAACGTATAAGCACAACTCAAATTGCT
GAAGCTTTGGCGTACCGCAATCTGGACAGGCGCCAAACGGCTACGGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-385)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.332

100

0.554
  comM Vibrio cholerae strain A1552

55.131

100

0.552
  comM Haemophilus influenzae Rd KW20

53.386

100

0.54
  comM Glaesserella parasuis strain SC1401

52.495

100

0.53
  comM Legionella pneumophila str. Paris

50.302

100

0.504
  comM Legionella pneumophila strain ERS1305867

50.302

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.38

100

0.478

Multiple sequence alignment