Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   ACFSN5_RS09130 Genome accession   NZ_CP172427
Coordinates   1978305..1980596 (-) Length   763 a.a.
NCBI ID   WP_165213184.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 1973305..1985596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS09110 (ACFSN5_09110) - 1973675..1974061 (+) 387 WP_165213192.1 DUF956 family protein -
  ACFSN5_RS09115 (ACFSN5_09115) - 1975080..1976081 (+) 1002 WP_165213190.1 PTS sugar transporter subunit IIB -
  ACFSN5_RS09120 (ACFSN5_09120) - 1976114..1976929 (+) 816 WP_165213188.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  ACFSN5_RS09125 (ACFSN5_09125) - 1976944..1977870 (+) 927 WP_165213186.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  ACFSN5_RS09130 (ACFSN5_09130) comA/nlmT 1978305..1980596 (-) 2292 WP_165213184.1 peptide cleavage/export ABC transporter Regulator
  ACFSN5_RS09135 (ACFSN5_09135) - 1981144..1981494 (-) 351 WP_165213182.1 hypothetical protein -
  ACFSN5_RS09140 (ACFSN5_09140) - 1981705..1982076 (+) 372 WP_165213180.1 DUF956 family protein -
  ACFSN5_RS09145 (ACFSN5_09145) serS 1982344..1983624 (+) 1281 WP_165213178.1 serine--tRNA ligase -
  ACFSN5_RS09150 (ACFSN5_09150) - 1983981..1984214 (-) 234 WP_165213176.1 leucocin A/sakacin P family class II bacteriocin -
  ACFSN5_RS09155 (ACFSN5_09155) - 1984511..1985167 (-) 657 WP_165213174.1 DNA alkylation repair protein -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 86087.07 Da        Isoelectric Point: 8.2473

>NTDB_id=1067690 ACFSN5_RS09130 WP_165213184.1 1978305..1980596(-) (comA/nlmT) [Streptococcus sp. ZJ 1593]
MNTFSYLLLTVVLVLLVNVFLKFIKYFFKTTPAMNKENSKKSSNFLWSRTRRFKFVPQIDNRDCGAAALASIAKHYGSDY
SLVHLRELTKTDRQGTTALGIIEAAKSIGFETHSLDADMSLFSYDDLIYPFIVHVVKNGRLQHYYVIYANERNHLIIGDP
DPNVQVTRISKEKFKSEWTGVAIFFSPRDDYQPQKDKRKGLISFIPSFLKQKGLLFYITMASLIVTLVDITGAFFLQTIL
DEYIPSQQISTLGLIAAGLIITYVVQQVIAFAKEYLLMVLGQRLTIDIILSYLKHIFILPMSFFATRRTGEITSRFTDAN
QIIDAMASTIFSIFLDFTMIIIVGGVLLIQNAVLFYLALISIPIYIMIIFSFMKMFGYLNYEVMESSAMMSSSIIEDING
IETIKSLTSEQTSYQRIDKEFVNFLERSFKLYKYGAIQNSIKTATKLILNVVILWYGARLVMTGKISVGQMITFNVLLGY
FSNPIENMINLQIKLQSARVANTRLNEVYLVESEFENDGELSEDSFLDGDISFEKLSYKYGYGRDTLSDINLTIAKGSKI
SLVGPSGSGKTTLAKMMVNFYEPNRGIARINGYDLKVIDKTALRQHISYLPQQAYVFSGTIMDNLTLGAKEGTTQEDIIR
ACELAEIRSDIEQMPLGYQTELSDGAGVSGGQKQRIALARALLTQAPVLILDEATSSLDVLTEKKIVDNLMAMTDKTIIF
VAHRLSIAQRTERIIVMDQGKIVETGSHKELLANKGFYYTLFN

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=1067690 ACFSN5_RS09130 WP_165213184.1 1978305..1980596(-) (comA/nlmT) [Streptococcus sp. ZJ 1593]
ATGAACACATTTTCTTATCTTCTTTTGACTGTAGTTTTAGTATTATTAGTCAATGTATTCTTAAAATTTATAAAATACTT
TTTTAAAACAACTCCAGCAATGAATAAGGAAAATTCTAAGAAATCTTCAAATTTTTTGTGGAGTCGAACTAGACGTTTTA
AGTTTGTTCCTCAAATAGATAATAGGGATTGTGGTGCTGCGGCTCTAGCCTCTATTGCCAAGCATTATGGCTCAGATTAT
TCTTTAGTTCATTTACGTGAACTGACAAAGACAGACCGACAAGGAACTACAGCATTAGGAATTATTGAAGCAGCTAAGAG
TATCGGTTTTGAAACACACTCTCTAGATGCTGATATGTCTTTATTTAGTTACGATGATCTTATCTATCCTTTTATTGTTC
ACGTTGTTAAAAATGGTCGTCTGCAACATTACTATGTTATTTATGCTAATGAAAGAAACCACTTAATCATTGGTGATCCT
GATCCCAATGTGCAAGTTACCCGTATAAGCAAAGAAAAATTTAAGTCCGAATGGACAGGTGTAGCAATCTTCTTCTCCCC
AAGAGATGATTACCAGCCCCAAAAGGACAAGAGAAAAGGACTAATAAGTTTTATACCATCTTTTTTAAAGCAGAAGGGTC
TCTTGTTTTATATTACCATGGCTAGTCTAATAGTTACTCTAGTTGATATTACTGGAGCCTTCTTCTTACAAACAATACTG
GATGAGTATATTCCAAGTCAACAAATTTCAACTTTAGGTCTCATCGCTGCAGGATTGATAATAACTTATGTTGTTCAACA
GGTAATAGCTTTCGCTAAAGAGTACCTATTGATGGTATTAGGACAAAGACTGACAATAGATATTATACTTTCCTATCTAA
AGCATATTTTTATTCTGCCTATGTCTTTCTTTGCAACTAGGAGAACTGGGGAAATTACATCTCGTTTCACGGATGCCAAT
CAAATTATTGATGCTATGGCATCGACAATTTTTTCAATTTTTCTAGATTTCACGATGATTATTATAGTTGGGGGAGTACT
TCTGATTCAAAATGCTGTCTTATTTTATCTTGCTCTCATTTCTATACCAATCTATATTATGATTATTTTCTCATTTATGA
AAATGTTTGGCTACTTAAATTATGAAGTGATGGAAAGTAGCGCAATGATGTCCTCATCTATCATAGAAGATATTAATGGA
ATAGAAACCATCAAATCTTTGACTAGTGAACAGACTAGTTACCAAAGAATTGACAAAGAATTTGTTAATTTTCTAGAAAG
ATCTTTTAAATTATACAAGTATGGAGCTATTCAAAACTCAATTAAAACTGCTACAAAGCTAATTTTGAATGTAGTTATTC
TTTGGTATGGAGCACGCTTAGTCATGACTGGAAAAATTTCAGTGGGACAAATGATTACATTTAACGTGCTTTTAGGATAT
TTTTCAAACCCGATTGAAAATATGATTAACTTACAGATTAAACTCCAATCAGCCCGCGTGGCTAATACCCGTCTCAATGA
GGTTTATCTGGTGGAGTCCGAGTTTGAAAATGATGGTGAGCTCTCTGAAGACAGCTTTTTAGATGGGGATATTTCCTTTG
AAAAATTGTCCTACAAGTATGGCTATGGCCGTGATACGCTGTCCGATATCAACCTGACCATCGCGAAGGGCTCTAAAATC
AGCTTGGTTGGGCCATCCGGCTCTGGTAAGACAACCCTAGCGAAGATGATGGTCAACTTCTATGAGCCCAATCGCGGGAT
CGCTCGGATCAACGGTTACGACCTCAAGGTTATCGATAAGACAGCTCTGCGGCAGCACATCAGCTACCTCCCCCAACAAG
CTTACGTGTTTAGTGGGACCATCATGGACAACCTGACCTTGGGAGCCAAGGAAGGCACGACTCAGGAAGATATTATCCGC
GCTTGTGAACTCGCTGAGATCCGCTCAGATATTGAACAAATGCCTTTGGGGTATCAGACCGAACTGTCTGATGGCGCAGG
TGTCTCGGGCGGCCAGAAACAGCGGATCGCCTTGGCACGTGCTCTTTTGACCCAAGCTCCGGTTTTGATTTTGGATGAAG
CTACCAGCAGTTTGGATGTCCTAACGGAAAAGAAAATTGTTGATAATCTCATGGCCATGACCGATAAGACGATTATTTTT
GTAGCTCACCGTTTGAGTATTGCGCAGCGGACAGAGCGGATTATTGTTATGGATCAAGGAAAGATTGTAGAGACCGGTAG
CCATAAGGAACTGTTGGCGAATAAAGGCTTCTATTACACACTGTTTAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

73.518

99.476

0.731

  comA Streptococcus mitis NCTC 12261

62.535

93.054

0.582

  comA Streptococcus gordonii str. Challis substr. CH1

61.485

93.578

0.575

  comA Streptococcus mitis SK321

61.831

93.054

0.575

  comA Streptococcus pneumoniae Rx1

61.69

93.054

0.574

  comA Streptococcus pneumoniae D39

61.69

93.054

0.574

  comA Streptococcus pneumoniae R6

61.69

93.054

0.574

  comA Streptococcus pneumoniae TIGR4

61.408

93.054

0.571


Multiple sequence alignment