Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACFSN5_RS08810 Genome accession   NZ_CP172427
Coordinates   1915524..1916192 (-) Length   222 a.a.
NCBI ID   WP_165213365.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910524..1921192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS08805 (ACFSN5_08805) hpf 1914900..1915448 (-) 549 WP_165213363.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACFSN5_RS08810 (ACFSN5_08810) comFC/cflB 1915524..1916192 (-) 669 WP_165213365.1 ComF family protein Machinery gene
  ACFSN5_RS08815 (ACFSN5_08815) comFA/cflA 1916193..1917491 (-) 1299 WP_398600646.1 DEAD/DEAH box helicase Machinery gene
  ACFSN5_RS08820 (ACFSN5_08820) - 1917538..1918167 (+) 630 WP_398600648.1 YigZ family protein -
  ACFSN5_RS08825 (ACFSN5_08825) cysK 1918267..1919196 (+) 930 WP_398600649.1 cysteine synthase A -
  ACFSN5_RS08830 (ACFSN5_08830) - 1919241..1919606 (-) 366 WP_398600651.1 S1 RNA-binding domain-containing protein -
  ACFSN5_RS08835 (ACFSN5_08835) - 1919606..1921003 (-) 1398 WP_398600653.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25911.13 Da        Isoelectric Point: 9.2718

>NTDB_id=1067683 ACFSN5_RS08810 WP_165213365.1 1915524..1916192(-) (comFC/cflB) [Streptococcus sp. ZJ 1593]
MECLICRNQIQNNIKFTSLFFMYQDEVYLCDECRDQFEPIRSKHCPSCYKSGIDEVCQDCLYWQKRGKEVNHRALYTYNQ
AMKQYFSAYKFQGDYLLRKVFSPIIRKVLVAYKGYTIVPIPLSNESFQKRKFNQVTGFLDATALTYCNLLKISRQGKPTQ
SSKTREERLKAEQFFVIDSTKKIPEKVLLVDDIYTTGATMILAKDLLVESGVKIVKTFSLAR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1067683 ACFSN5_RS08810 WP_165213365.1 1915524..1916192(-) (comFC/cflB) [Streptococcus sp. ZJ 1593]
ATGGAGTGTTTGATATGTCGTAATCAAATTCAAAATAACATTAAATTTACCTCGCTCTTTTTTATGTATCAGGATGAAGT
CTACCTTTGTGACGAATGTAGGGACCAATTCGAACCAATTCGTTCGAAACATTGTCCGAGTTGCTACAAATCTGGGATTG
ATGAAGTTTGCCAAGACTGTCTTTATTGGCAGAAGAGAGGGAAAGAAGTCAATCACAGAGCACTGTATACCTACAACCAG
GCAATGAAACAATACTTTTCTGCGTATAAATTCCAAGGAGATTATTTGTTAAGAAAAGTGTTTTCGCCTATTATTAGAAA
AGTTTTAGTTGCTTATAAAGGGTACACAATTGTCCCAATTCCCCTAAGTAATGAAAGTTTTCAAAAGAGGAAATTTAATC
AGGTCACTGGATTTTTAGATGCTACCGCTTTGACATATTGCAATCTCCTAAAAATTAGCAGACAAGGAAAACCCACTCAA
TCTAGTAAGACGAGAGAAGAAAGACTAAAGGCTGAACAGTTTTTTGTGATCGATTCCACTAAAAAAATTCCAGAAAAGGT
CCTATTAGTGGATGATATCTATACGACAGGGGCTACAATGATTCTAGCTAAAGATTTACTTGTTGAAAGTGGCGTGAAAA
TTGTAAAAACTTTTTCATTGGCGCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

48.198

100

0.482
  comFC/cflB Streptococcus pneumoniae Rx1

47.748

100

0.477
  comFC/cflB Streptococcus pneumoniae D39

47.748

100

0.477
  comFC/cflB Streptococcus pneumoniae R6

47.748

100

0.477
  comFC/cflB Streptococcus mitis NCTC 12261

47.297

100

0.473
  comFC/cflB Streptococcus mitis SK321

46.396

100

0.464

Multiple sequence alignment