Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ACFSN5_RS02900 Genome accession   NZ_CP172427
Coordinates   588372..589355 (+) Length   327 a.a.
NCBI ID   WP_165329168.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 583372..594355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS02865 (ACFSN5_02865) - 583814..584272 (+) 459 WP_004228967.1 LytTR family DNA-binding domain-containing protein -
  ACFSN5_RS02870 (ACFSN5_02870) - 584269..584646 (+) 378 WP_004229801.1 hypothetical protein -
  ACFSN5_RS02875 (ACFSN5_02875) - 584771..585622 (+) 852 WP_165329172.1 CPBP family intramembrane glutamic endopeptidase -
  ACFSN5_RS02880 (ACFSN5_02880) - 585619..586578 (+) 960 WP_165329171.1 ketopantoate reductase family protein -
  ACFSN5_RS02885 (ACFSN5_02885) - 586603..586989 (-) 387 WP_165209313.1 hypothetical protein -
  ACFSN5_RS02890 (ACFSN5_02890) - 586982..587584 (-) 603 WP_165329170.1 TetR/AcrR family transcriptional regulator -
  ACFSN5_RS02895 (ACFSN5_02895) - 587761..588252 (+) 492 WP_165329169.1 YkgJ family cysteine cluster protein -
  ACFSN5_RS02900 (ACFSN5_02900) coiA 588372..589355 (+) 984 WP_165329168.1 competence protein CoiA Machinery gene
  ACFSN5_RS02905 (ACFSN5_02905) pepF 589388..591199 (+) 1812 WP_165329167.1 oligoendopeptidase F Regulator
  ACFSN5_RS02910 (ACFSN5_02910) typA 591392..593239 (+) 1848 WP_165329166.1 translational GTPase TypA -
  ACFSN5_RS02915 (ACFSN5_02915) - 593373..593675 (+) 303 WP_004229369.1 DUF3165 family protein -

Sequence


Protein


Download         Length: 327 a.a.        Molecular weight: 38435.57 Da        Isoelectric Point: 9.6365

>NTDB_id=1067664 ACFSN5_RS02900 WP_165329168.1 588372..589355(+) (coiA) [Streptococcus sp. ZJ 1593]
MLVAKDNDGHLVSLLEGQIEVGKAPFTCPGCGALVRLKKGKIRRPYFAHLSLKSCQFFWENEGQEHLGLKSELYRSLKPV
CQVRIEVVLPDLQQVADLLVEDNLALEVQCSTLSRERLKERTHAYRSYGFQVRWLLGKKLWLRKSLTALQKDFLYFSANI
GFHLWELDLAKRCLRLKYLIYEDWHGHVHYLIKECPFSENCLDFLRQPYVRQPLASYKVKMDQQLLGYIQRQLYSRNPRW
LKRQAQAYERGDNLLAKSLADYYPQVRPPKGPFCQMKRDLTTFENNFLAYYQTAHNQTVQVLYPPAFYDKIEGKSMKGNF
EKVQVKN

Nucleotide


Download         Length: 984 bp        

>NTDB_id=1067664 ACFSN5_RS02900 WP_165329168.1 588372..589355(+) (coiA) [Streptococcus sp. ZJ 1593]
ATGCTCGTCGCTAAAGACAATGATGGCCACTTGGTTTCTCTTTTAGAAGGACAAATTGAGGTTGGGAAAGCCCCTTTTAC
CTGTCCAGGTTGCGGAGCCTTAGTTCGTTTGAAAAAGGGCAAGATTAGGCGACCTTATTTTGCCCACCTTTCCCTGAAGA
GCTGTCAATTTTTTTGGGAAAATGAGGGTCAAGAACATTTGGGGCTCAAGTCTGAACTCTATCGCTCCTTGAAACCAGTC
TGTCAGGTGCGGATTGAAGTGGTTCTGCCAGATTTACAGCAGGTGGCTGATCTCTTGGTTGAGGATAACTTGGCCTTAGA
AGTTCAATGTTCGACTTTATCGAGAGAGCGTTTGAAGGAACGAACTCATGCCTATCGCTCTTATGGATTTCAAGTGCGTT
GGCTTTTGGGCAAAAAGCTCTGGCTGAGAAAGTCTCTGACGGCCCTGCAAAAAGATTTCCTCTATTTTTCAGCTAATATA
GGCTTTCATCTCTGGGAGCTAGATTTGGCAAAACGCTGTTTACGCCTAAAGTACCTGATTTATGAGGACTGGCATGGGCA
TGTTCACTATTTGATTAAAGAGTGTCCTTTTTCTGAGAACTGTTTGGACTTTCTGCGCCAGCCTTACGTCAGGCAGCCTC
TAGCTTCCTATAAGGTCAAGATGGATCAGCAACTTCTTGGCTACATTCAGCGCCAGCTCTACAGCAGAAATCCTAGGTGG
TTGAAGCGTCAAGCTCAAGCTTATGAACGTGGGGATAATTTACTAGCCAAATCGCTAGCAGACTACTATCCGCAAGTTCG
ACCTCCTAAGGGGCCTTTCTGCCAAATGAAACGAGATTTGACGACTTTTGAGAACAATTTTCTGGCCTACTATCAGACTG
CTCATAATCAGACTGTACAAGTGCTTTATCCACCAGCTTTTTATGATAAAATAGAAGGAAAATCTATGAAGGGAAATTTT
GAAAAGGTGCAGGTGAAGAACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.158

96.942

0.486

  coiA Streptococcus pneumoniae TIGR4

49.527

96.942

0.48

  coiA Streptococcus pneumoniae Rx1

49.211

96.942

0.477

  coiA Streptococcus pneumoniae D39

49.211

96.942

0.477

  coiA Streptococcus pneumoniae R6

49.211

96.942

0.477

  coiA Lactococcus lactis subsp. cremoris KW2

40.483

100

0.41


Multiple sequence alignment