Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACFSN5_RS02905 Genome accession   NZ_CP172427
Coordinates   589388..591199 (+) Length   603 a.a.
NCBI ID   WP_165329167.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 584388..596199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS02875 (ACFSN5_02875) - 584771..585622 (+) 852 WP_165329172.1 CPBP family intramembrane glutamic endopeptidase -
  ACFSN5_RS02880 (ACFSN5_02880) - 585619..586578 (+) 960 WP_165329171.1 ketopantoate reductase family protein -
  ACFSN5_RS02885 (ACFSN5_02885) - 586603..586989 (-) 387 WP_165209313.1 hypothetical protein -
  ACFSN5_RS02890 (ACFSN5_02890) - 586982..587584 (-) 603 WP_165329170.1 TetR/AcrR family transcriptional regulator -
  ACFSN5_RS02895 (ACFSN5_02895) - 587761..588252 (+) 492 WP_165329169.1 YkgJ family cysteine cluster protein -
  ACFSN5_RS02900 (ACFSN5_02900) coiA 588372..589355 (+) 984 WP_165329168.1 competence protein CoiA Machinery gene
  ACFSN5_RS02905 (ACFSN5_02905) pepF 589388..591199 (+) 1812 WP_165329167.1 oligoendopeptidase F Regulator
  ACFSN5_RS02910 (ACFSN5_02910) typA 591392..593239 (+) 1848 WP_165329166.1 translational GTPase TypA -
  ACFSN5_RS02915 (ACFSN5_02915) - 593373..593675 (+) 303 WP_004229369.1 DUF3165 family protein -
  ACFSN5_RS02920 (ACFSN5_02920) murD 594108..595463 (+) 1356 WP_165209331.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69259.76 Da        Isoelectric Point: 5.0945

>NTDB_id=1067665 ACFSN5_RS02905 WP_165329167.1 589388..591199(+) (pepF) [Streptococcus sp. ZJ 1593]
MTNNRAHIDKKYKWDLTSVFATDQAWEAEYQSLEKAVVEAKDLAGQLGQSATKLLQVTQIYLDLARRLEKVYVYASMKND
QDTRVAAYQAMASKATTLYAKYGEAFAFFEPEVLTMGEEKFANYLQEDAKLNLYQHFFQQIFSQKAHVLAPDQEELLAQA
QEVLGAAGETYEILDNADLAFPSVLDEAGKEVELTHSNFITLMESQNREVRKSAYRAYYSIYQQFQHTYAKTLATTVKSH
NLTARIRHYDSARQAAMADNHIPEAVYETLLATVHKYLPLLQRYIRLRQEVLGIADLKMYDVYTPLSKLDMSITYEEAQA
KALEVLAIYGSDYTERVKEALSQRWIDVQANKGKRSGAYSGGSYDTKAFMLLNWQDTLDNLYTLVHEMGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENIMTETLLKEAKTDKERFAILNHYLDSFKGTVFRQTQFAEFEEKIHQADAQGQVLTSQY
LNELYADLNQTYYGLAKEGNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLAEKIIHGSQEDRESYLNYLKAGSSADPL
EVIAKAGVDMTQADYLESAFQTFAKRLDEFDCLVKKNRLKELS

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1067665 ACFSN5_RS02905 WP_165329167.1 589388..591199(+) (pepF) [Streptococcus sp. ZJ 1593]
ATGACCAATAATCGTGCTCATATTGATAAAAAATATAAATGGGATTTGACTAGCGTTTTTGCAACCGATCAGGCATGGGA
GGCTGAATACCAATCGTTAGAAAAGGCGGTAGTCGAAGCAAAGGATTTGGCTGGACAGCTTGGTCAGTCTGCGACTAAGC
TCCTGCAGGTAACGCAAATCTATCTGGACTTGGCTCGCCGGCTGGAGAAGGTCTATGTTTATGCTTCCATGAAAAATGAT
CAGGATACAAGAGTCGCCGCCTATCAAGCAATGGCTTCGAAAGCGACAACACTTTATGCTAAGTATGGTGAGGCTTTCGC
CTTTTTTGAGCCTGAAGTTCTAACCATGGGGGAAGAAAAGTTTGCAAATTATCTGCAAGAAGATGCCAAGCTAAATCTTT
ATCAGCACTTCTTCCAGCAAATTTTTTCCCAAAAGGCTCACGTCTTAGCACCAGATCAAGAGGAACTCTTAGCTCAGGCT
CAGGAAGTCCTAGGAGCAGCCGGTGAGACTTACGAAATTTTGGATAATGCTGACCTGGCTTTTCCAAGTGTCCTTGACGA
AGCTGGTAAAGAAGTCGAGTTGACTCACAGCAACTTTATCACCTTGATGGAATCTCAAAATAGAGAGGTTCGCAAGTCTG
CCTATCGAGCTTACTATAGTATTTATCAGCAATTCCAGCACACCTATGCCAAGACCTTGGCGACAACGGTCAAGAGTCAT
AATTTAACTGCGAGGATTCGCCATTATGATTCTGCCCGTCAGGCTGCTATGGCTGACAACCATATTCCAGAGGCTGTTTA
TGAGACCCTGCTTGCAACAGTTCATAAATATCTTCCCTTATTGCAACGTTACATACGTCTGCGGCAGGAAGTTTTAGGGA
TAGCAGATTTAAAAATGTATGATGTCTATACGCCCCTGTCCAAGCTGGACATGTCCATTACTTATGAAGAAGCTCAGGCC
AAAGCTTTGGAGGTTTTGGCAATCTATGGGTCAGACTACACTGAGCGGGTAAAAGAAGCTCTGTCTCAGCGGTGGATTGA
TGTTCAGGCCAACAAGGGCAAACGTTCGGGAGCCTATTCAGGTGGTTCTTACGATACCAAAGCTTTTATGCTACTCAACT
GGCAGGACACGCTGGACAACCTCTATACCTTGGTTCATGAGATGGGGCATAGTATGCATTCGACTTTTACCCGTGAGAAT
CAGCCCTATGTCTATGGGGATTATTCAATTTTCTTGGCTGAGATTGCCTCGACTACTAATGAAAATATTATGACCGAGAC
TCTGCTCAAGGAAGCGAAGACTGACAAGGAGCGTTTTGCTATTCTTAATCATTATTTGGATAGTTTCAAGGGGACGGTCT
TTCGTCAAACTCAGTTTGCAGAATTTGAAGAGAAGATTCATCAGGCAGACGCCCAAGGTCAAGTCTTAACGAGTCAGTAT
TTAAATGAGCTCTATGCGGACCTCAATCAAACTTATTATGGCCTAGCCAAGGAAGGTAATCCTGAGATTCAATATGAATG
GGCACGTATTCCTCATTTTTACTATAATTACTATGTCTATCAGTATGCGACAGGTTTTGCAGCTGCTAGTTATCTGGCTG
AAAAAATTATCCATGGTTCTCAAGAGGATAGGGAGAGTTATCTGAACTATCTTAAGGCCGGAAGTTCTGCCGATCCTCTG
GAAGTCATTGCCAAGGCAGGGGTGGACATGACTCAGGCGGATTACTTAGAGTCTGCTTTCCAGACTTTTGCCAAACGTCT
GGATGAATTTGATTGCCTAGTCAAAAAGAATAGGCTTAAGGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.149

99.005

0.625

Multiple sequence alignment