Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHZDB_RS10635 Genome accession   NZ_CP172405
Coordinates   2336172..2337695 (+) Length   507 a.a.
NCBI ID   WP_399423914.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331172..2342695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS10620 (ACHZDB_10620) ilvE 2332816..2333754 (-) 939 WP_005429790.1 branched-chain-amino-acid transaminase -
  ACHZDB_RS10625 (ACHZDB_10625) ilvM 2333767..2334051 (-) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  ACHZDB_RS10630 (ACHZDB_10630) ilvG 2334063..2335709 (-) 1647 WP_045451523.1 acetolactate synthase 2 catalytic subunit -
  ACHZDB_RS10635 (ACHZDB_10635) comM 2336172..2337695 (+) 1524 WP_399423914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHZDB_RS10640 (ACHZDB_10640) - 2337708..2338541 (-) 834 WP_005429755.1 sensor domain-containing diguanylate cyclase -
  ACHZDB_RS10645 (ACHZDB_10645) - 2338686..2339642 (-) 957 WP_167425608.1 DUF2860 domain-containing protein -
  ACHZDB_RS10650 (ACHZDB_10650) - 2339812..2340690 (+) 879 WP_050913663.1 acyltransferase -
  ACHZDB_RS10655 (ACHZDB_10655) - 2340760..2341362 (-) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACHZDB_RS10660 (ACHZDB_10660) - 2341397..2342383 (-) 987 WP_045371983.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54969.06 Da        Isoelectric Point: 9.0828

>NTDB_id=1067453 ACHZDB_RS10635 WP_399423914.1 2336172..2337695(+) (comM) [Vibrio campbellii strain LB503]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1067453 ACHZDB_RS10635 WP_399423914.1 2336172..2337695(+) (comM) [Vibrio campbellii strain LB503]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAGAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCTGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAATTAGCCCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTATTGCCCGCTGCATTGGCTGCTAATAAAAAACAGC
GCCGTTTAGTGGTGCCTCATGCTAATGGCGATCAGGCGGCACTTGTCGGCAAGGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCAGAGCTTTGTGGTCAACACCAATTGAATTTGTACCAAACGCCCAAGAAGAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAGGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGCGAAATCAATGAACACAATTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGCTTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGCAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGCTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GTCTTGGATTGTCGATTCGTGCTTATCACCGCATCATTAAAGTTGCGCGTACTATTGCCGATCTGGAGGGTTCACCGCAA
ATTGAGCGAACGCACCTAGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCACAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.606

100

0.996
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

49.799

98.225

0.489
  comM Legionella pneumophila strain ERS1305867

49.799

98.225

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment