Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHFB9_RS01095 Genome accession   NZ_CP172404
Coordinates   248924..250420 (-) Length   498 a.a.
NCBI ID   WP_417069133.1    Uniprot ID   -
Organism   Niveibacterium terrae strain 24SJ04S-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 243924..255420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFB9_RS01070 (ACHFB9_01070) galE 244086..245099 (+) 1014 WP_417069128.1 UDP-glucose 4-epimerase GalE -
  ACHFB9_RS01075 (ACHFB9_01075) galT 245110..246150 (+) 1041 WP_417069129.1 galactose-1-phosphate uridylyltransferase -
  ACHFB9_RS01080 (ACHFB9_01080) galK 246147..247292 (+) 1146 WP_417069130.1 galactokinase -
  ACHFB9_RS01085 (ACHFB9_01085) - 247306..248481 (-) 1176 WP_417069131.1 class I SAM-dependent methyltransferase -
  ACHFB9_RS01090 (ACHFB9_01090) - 248486..248872 (-) 387 WP_417069132.1 hypothetical protein -
  ACHFB9_RS01095 (ACHFB9_01095) comM 248924..250420 (-) 1497 WP_417069133.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHFB9_RS01100 (ACHFB9_01100) - 250513..252681 (-) 2169 WP_417069134.1 AsmA family protein -
  ACHFB9_RS01105 (ACHFB9_01105) - 252681..253556 (-) 876 WP_417069135.1 sensor histidine kinase -
  ACHFB9_RS01110 (ACHFB9_01110) mscL 253656..254081 (+) 426 WP_417069136.1 large conductance mechanosensitive channel protein MscL -
  ACHFB9_RS01115 (ACHFB9_01115) - 254235..254936 (-) 702 WP_417069137.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52638.58 Da        Isoelectric Point: 7.4570

>NTDB_id=1067405 ACHFB9_RS01095 WP_417069133.1 248924..250420(-) (comM) [Niveibacterium terrae strain 24SJ04S-2]
MALASVFSRALEGMDAPEVAVEVHLSGGLPCFSLVGLPETEVREARDRVRAALLTCNFDFPQSHITANLAPADLPKEGGR
FDLPIALGILAASGQIKLSALADTEFAGELSLTGALRPVRGALAMALATRHSGRKLLLPAGNAAEAALASGVQVIAAASL
LEVVAHLNGQAPLPFAEPSARASLPIYPDLADVRGQLTARRALEIAAVGQHSLLLFGPPGTGKSMLAQRLPGILPPMSEA
EALESATILSLEGSFEARNWGRRPVRAPHHSASAVALVGGGSTPRPGEISLAHQGVLFLDELPEFDRRVLEALREPLETG
RISVSRAARRAEFPARFQLVAAMNPCPCGFHGSPSGRCHCTPEQIHRYLARLSGPFLDRIDISVEVAAIACEDLRGRPGE
ASAPVRKRVCRARETALERQGCANALLEVAELDEFCQPDPDGARLLAQASLHLGLSGRATHRLLRVARSIADLAGAQRIG
TAQIAEAIQMRRSLLPPP

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1067405 ACHFB9_RS01095 WP_417069133.1 248924..250420(-) (comM) [Niveibacterium terrae strain 24SJ04S-2]
ATGGCTCTGGCATCGGTTTTCAGTCGCGCGCTCGAAGGCATGGACGCACCGGAAGTCGCGGTCGAAGTCCATCTCTCCGG
TGGCCTGCCCTGCTTCTCGCTGGTCGGTCTGCCCGAGACCGAAGTCCGTGAAGCCCGCGACCGGGTCCGCGCCGCGCTGC
TGACCTGCAATTTCGACTTCCCGCAGAGCCACATCACCGCGAACCTCGCTCCCGCCGATCTACCCAAGGAAGGCGGTCGC
TTCGATCTGCCTATCGCTCTGGGCATCCTCGCCGCGTCAGGTCAGATCAAACTCTCCGCGCTCGCGGACACCGAGTTCGC
CGGCGAGCTGTCGCTGACCGGCGCGCTGCGCCCGGTGCGCGGAGCGCTGGCGATGGCACTGGCCACGCGGCATTCCGGCC
GCAAGCTGCTGCTCCCGGCCGGCAATGCCGCCGAAGCGGCGCTAGCGAGCGGAGTCCAGGTCATCGCCGCGGCGAGCCTG
CTCGAAGTCGTCGCGCACCTGAACGGCCAAGCGCCTCTGCCTTTCGCCGAGCCTTCCGCGCGCGCTTCGCTGCCGATCTA
CCCCGACCTCGCCGACGTGCGCGGTCAGCTCACCGCCCGCCGGGCGCTGGAGATAGCCGCGGTCGGCCAGCACTCGCTGC
TGCTCTTCGGGCCGCCGGGAACCGGCAAGTCGATGCTGGCCCAGCGCCTGCCCGGCATCCTGCCGCCGATGAGCGAGGCC
GAAGCGCTGGAATCGGCGACGATCCTGTCGCTCGAAGGCAGCTTCGAAGCCCGGAACTGGGGGAGAAGGCCAGTCCGCGC
CCCTCATCACTCCGCTTCCGCGGTCGCCCTGGTCGGAGGCGGCAGCACTCCGCGGCCGGGCGAGATCTCGCTGGCCCATC
AGGGCGTACTCTTTCTCGACGAACTCCCCGAGTTCGACCGCCGCGTGCTCGAAGCGCTGCGCGAGCCGCTGGAGACCGGC
CGGATCAGCGTCTCGCGCGCGGCCCGGCGCGCCGAGTTCCCGGCCCGCTTCCAGCTCGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTTTCACGGCTCGCCTTCGGGCCGCTGCCACTGCACGCCCGAGCAGATCCACCGCTATCTGGCAAGGCTGTCCG
GCCCTTTCCTCGATCGCATCGACATCAGCGTCGAAGTCGCCGCGATCGCCTGCGAGGATCTCCGGGGACGGCCGGGAGAG
GCGTCGGCGCCGGTGCGCAAGCGGGTCTGCCGCGCGCGCGAGACCGCGCTCGAGCGCCAGGGTTGCGCAAACGCGTTGCT
CGAAGTCGCCGAACTCGACGAATTCTGCCAGCCCGATCCGGACGGCGCCCGCCTGCTCGCCCAGGCCAGCCTCCATCTTG
GCCTCTCCGGCCGTGCGACGCACCGACTGCTGAGGGTCGCGCGCAGCATCGCCGACCTCGCTGGTGCGCAGCGCATCGGC
ACGGCGCAGATCGCCGAAGCGATCCAGATGCGGCGCAGTCTGCTCCCGCCCCCTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.108

100

0.542
  comM Vibrio campbellii strain DS40M4

53.939

99.398

0.536
  comM Glaesserella parasuis strain SC1401

53.106

100

0.532
  comM Vibrio cholerae strain A1552

53.535

99.398

0.532
  comM Legionella pneumophila str. Paris

47.913

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.913

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.02

100

0.454

Multiple sequence alignment