Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACAM57_RS29635 Genome accession   NZ_AP028659
Coordinates   6264676..6265215 (-) Length   179 a.a.
NCBI ID   WP_184640175.1    Uniprot ID   -
Organism   Variovorax sp. V15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6259676..6270215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM57_RS29615 (GmRootV15_58840) - 6260328..6261875 (-) 1548 WP_369659910.1 AMP-binding protein -
  ACAM57_RS29620 (GmRootV15_58850) - 6262034..6263035 (-) 1002 WP_369659911.1 LysR family transcriptional regulator -
  ACAM57_RS29625 (GmRootV15_58860) - 6263224..6263679 (+) 456 WP_369659912.1 phage integrase family protein -
  ACAM57_RS29630 (GmRootV15_58870) - 6263676..6264329 (+) 654 WP_369659913.1 hypothetical protein -
  ACAM57_RS29635 (GmRootV15_58880) ssb 6264676..6265215 (-) 540 WP_184640175.1 single-stranded DNA-binding protein Machinery gene
  ACAM57_RS29640 (GmRootV15_58890) - 6265324..6266715 (+) 1392 WP_369659914.1 chloride channel protein -
  ACAM57_RS29645 (GmRootV15_58900) uvrA 6266734..6269847 (+) 3114 WP_369659915.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18996.92 Da        Isoelectric Point: 5.9505

>NTDB_id=106728 ACAM57_RS29635 WP_184640175.1 6264676..6265215(-) (ssb) [Variovorax sp. V15]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGGYGGGGGYSQGGGGGGGYAPRAPAAAPRAPAPAPR
QAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=106728 ACAM57_RS29635 WP_184640175.1 6264676..6265215(-) (ssb) [Variovorax sp. V15]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAGATGCGTACATTCCCGAGCGGCGACCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAGATCCGCGCTGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGCCCTTCGGGTCCCAGCGATGACGACGGCGGCTACGGCGGTGGCGGCGGCTACT
CGCAAGGCGGCGGTGGTGGTGGCGGCTACGCCCCGCGCGCACCCGCGGCCGCACCGCGCGCTCCGGCGCCGGCTCCGCGC
CAGGCACCGGCCAAGTCGTCGTCGGGCTTCGATGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.632

100

0.559
  ssb Vibrio cholerae strain A1552

48.108

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464
  ssb Neisseria meningitidis MC58

45.506

99.441

0.453

Multiple sequence alignment