Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHZ97_RS19105 Genome accession   NZ_CP172310
Coordinates   4091450..4092964 (+) Length   504 a.a.
NCBI ID   WP_396616128.1    Uniprot ID   -
Organism   Lysobacter soli strain P18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4086450..4097964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZ97_RS19080 (ACHZ97_19080) speE 4087705..4088559 (+) 855 WP_396616124.1 polyamine aminopropyltransferase -
  ACHZ97_RS19085 (ACHZ97_19085) - 4088785..4089444 (+) 660 WP_396616125.1 phosphotransferase -
  ACHZ97_RS19090 (ACHZ97_19090) - 4089446..4090558 (-) 1113 WP_396616126.1 acyltransferase family protein -
  ACHZ97_RS19095 (ACHZ97_19095) - 4090612..4090950 (-) 339 WP_396616127.1 P-II family nitrogen regulator -
  ACHZ97_RS19100 (ACHZ97_19100) - 4091141..4091437 (+) 297 WP_115844335.1 accessory factor UbiK family protein -
  ACHZ97_RS19105 (ACHZ97_19105) comM 4091450..4092964 (+) 1515 WP_396616128.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHZ97_RS19110 (ACHZ97_19110) - 4093076..4093558 (-) 483 WP_396616129.1 hypothetical protein -
  ACHZ97_RS19115 (ACHZ97_19115) - 4093627..4094100 (-) 474 WP_396616130.1 hypothetical protein -
  ACHZ97_RS19120 (ACHZ97_19120) - 4094236..4095408 (-) 1173 WP_396616131.1 putative peptide maturation dehydrogenase -
  ACHZ97_RS19125 (ACHZ97_19125) - 4095649..4095996 (+) 348 WP_396616132.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52947.88 Da        Isoelectric Point: 8.6138

>NTDB_id=1066227 ACHZ97_RS19105 WP_396616128.1 4091450..4092964(+) (comM) [Lysobacter soli strain P18]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVRESKDRVRAAILCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQIPLEALADGEFLGELGLTGELRAVDGVLPAALAACDAGRKLIVPAGNGAEAALASRVEVRTARTL
LEVCAHLTGRKPLPFAEAPALERTLGPDLADVRGQSQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEATESE
ALEAAAIASVSGRGLDPARWRERPFRSPHHTASAVALVGGGAQPRPGEISLAHQGVLFLDELPEWDRRALEVLREPLESG
VITVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSPDAVRRYRGRVSGPLLDRIDLHVEVARLPPAALRPDAPA
GESTGTVRARVVEARARQHARAGKTNAVLDQPETASACRLADADRLLLERAVDALQLSARSMHRIMRVARTIADLDGADA
IGTAHLTEAISLRRATRGIEAAVA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1066227 ACHZ97_RS19105 WP_396616128.1 4091450..4092964(+) (comM) [Lysobacter soli strain P18]
ATGAACCTGGCACTCGTGCACAGCCGTGCACGATCGGGCGTCCGTGCGCCCGCGGTACGCGTTGAAGTGCATCTGGCGGG
CGGATTGCCCGCGATGTCCATCGTCGGATTGCCCGAGGCAGCGGTACGCGAATCGAAGGATCGCGTGCGCGCGGCGATCC
TCTGCGCGCAGTTCGAGTTCCCGGCACGCCGCATCACGGTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTCGCGGCCAGCGGACAGATCCCGCTGGAAGCGCTGGCCGACGGCGAATTCCT
CGGCGAGCTCGGACTCACGGGCGAACTGCGCGCGGTCGACGGCGTGCTGCCTGCCGCGCTGGCCGCCTGCGATGCCGGTC
GAAAGCTCATCGTCCCGGCCGGAAACGGCGCCGAAGCCGCGCTCGCCAGCCGCGTCGAAGTCCGCACGGCGCGCACGTTG
CTGGAAGTCTGCGCGCATCTCACGGGGCGCAAGCCACTTCCGTTCGCCGAAGCGCCCGCACTTGAACGCACGCTTGGCCC
CGACCTCGCCGACGTGCGCGGCCAGTCCCAGGCGCGACGCGCGCTGGAGATCGCCGCGGCCGGCGGTCACCACCTTCTTC
TGATCGGCCCGCCGGGTTGCGGCAAGACGCTGCTGGCGTCGCGCCTCCCGGGCCTATTGCCGGAGGCGACCGAAAGCGAG
GCGTTGGAAGCGGCGGCGATCGCGTCGGTCAGCGGGCGCGGGCTCGATCCGGCGCGTTGGCGCGAGCGGCCCTTCCGATC
GCCGCACCACACCGCCAGTGCGGTCGCGCTGGTCGGCGGTGGCGCACAACCGCGGCCGGGCGAGATCTCGCTTGCGCACC
AGGGGGTGCTCTTCCTGGACGAGTTGCCCGAATGGGATCGTCGCGCGCTGGAAGTCCTGCGCGAACCGCTGGAGTCCGGC
GTCATCACCGTGTCGCGCGCGGCGCGCAGTGCGGAGTTTCCGGCGCGATTTCAGCTGGTGGCGGCGATGAATCCCTGCCC
GTGCGGTTGGGCCGGCGACCCGTCCGGGCGATGCCGCTGCAGTCCGGACGCGGTTCGACGCTACCGCGGCCGCGTGTCGG
GGCCACTGCTCGATCGCATCGACCTGCACGTCGAAGTCGCACGCCTGCCGCCTGCCGCGCTCCGACCCGATGCACCCGCC
GGGGAATCCACCGGCACCGTCCGCGCACGCGTCGTCGAAGCCCGCGCGCGGCAGCATGCGCGCGCCGGGAAGACGAACGC
GGTGCTCGACCAGCCCGAAACCGCATCGGCGTGCCGGCTCGCCGACGCCGACCGGCTGCTGCTCGAACGCGCCGTGGACG
CCCTGCAGCTGTCGGCGCGCTCGATGCACCGGATCATGCGTGTCGCACGAACGATCGCCGATCTCGATGGCGCGGACGCC
ATCGGTACGGCGCACCTGACCGAAGCCATTTCGCTGCGGCGCGCAACGCGCGGGATCGAAGCCGCGGTGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

99.008

0.548
  comM Vibrio campbellii strain DS40M4

54.15

100

0.544
  comM Glaesserella parasuis strain SC1401

53.229

100

0.54
  comM Haemophilus influenzae Rd KW20

52.86

100

0.532
  comM Legionella pneumophila str. Paris

51.004

98.81

0.504
  comM Legionella pneumophila strain ERS1305867

51.004

98.81

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.97

100

0.452

Multiple sequence alignment