Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACF0KO_RS21430 Genome accession   NZ_CP172307
Coordinates   4866662..4868191 (+) Length   509 a.a.
NCBI ID   WP_064031396.1    Uniprot ID   A0A177N5Y2
Organism   Methylomonas sp. 2B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4861662..4873191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0KO_RS21400 (ACF0KO_21400) - 4862030..4862932 (-) 903 WP_064031390.1 serine/threonine-protein kinase -
  ACF0KO_RS21405 (ACF0KO_21405) - 4862987..4863838 (+) 852 WP_231883758.1 YicC/YloC family endoribonuclease -
  ACF0KO_RS21410 (ACF0KO_21410) - 4863859..4864287 (+) 429 WP_064031392.1 winged helix-turn-helix domain-containing protein -
  ACF0KO_RS21415 (ACF0KO_21415) - 4864442..4865671 (-) 1230 WP_064031393.1 NADP-dependent isocitrate dehydrogenase -
  ACF0KO_RS21420 (ACF0KO_21420) - 4865819..4866400 (+) 582 WP_064031394.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACF0KO_RS21425 (ACF0KO_21425) - 4866406..4866657 (+) 252 WP_064031395.1 accessory factor UbiK family protein -
  ACF0KO_RS21430 (ACF0KO_21430) comM 4866662..4868191 (+) 1530 WP_064031396.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACF0KO_RS21435 (ACF0KO_21435) - 4868245..4868847 (-) 603 WP_064031397.1 peroxiredoxin -
  ACF0KO_RS21440 (ACF0KO_21440) - 4869100..4869612 (+) 513 WP_064031398.1 hypothetical protein -
  ACF0KO_RS21445 (ACF0KO_21445) nadC 4869625..4870458 (-) 834 WP_064031399.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACF0KO_RS21450 (ACF0KO_21450) ampD 4870527..4871108 (+) 582 WP_082885702.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACF0KO_RS21455 (ACF0KO_21455) - 4871161..4873095 (-) 1935 WP_064031400.1 dynamin family protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54300.30 Da        Isoelectric Point: 7.8688

>NTDB_id=1066207 ACF0KO_RS21430 WP_064031396.1 4866662..4868191(+) (comM) [Methylomonas sp. 2B]
MSLAVVYSRGRTGIDAPLVTVEVDVANGLPALNIVGLPETAVKESKDRVRGAIVNSQFEFPIARITVNLAPADLPKEGGR
FDLAIALGILAASGQIPKTTLHEYECIGELALGGELRPIPGALPVAIHCRNAARQLILPVSCAAEASLIQDAALLPARTL
LEICAHLTGRQAIDSASYAFGLPTAAFDIDFADVHGQFHVKRALEIAAAGAHNLLMLGPPGTGKSMLAARLPTILPELSE
QQAQETAAIASVSDQGLDVGRWRQPPFRAPHHTASAAALVGGGSNPKPGEISLAHHGALFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPARFQLIAAMNPCPCGYLGDSSGRCRCTSEQIARYRARVSGPLLDRIDMHLEVPRVPISVLREGA
SAGEERSEIIRGRVAAARSIAYSRCGKANSALSAAEVKRYCTLTDAGHRLLEQAMEKFGLSHRAYHRILKLARTIADLAG
SNTIEIPHLSEAIGYRKLDRTRGGPNSGT

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1066207 ACF0KO_RS21430 WP_064031396.1 4866662..4868191(+) (comM) [Methylomonas sp. 2B]
ATGTCGCTGGCAGTGGTGTACAGCCGGGGGCGCACCGGCATAGACGCCCCGCTGGTCACCGTCGAAGTCGATGTCGCCAA
CGGCTTGCCGGCCCTAAACATCGTCGGCTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGATAGGGTGAGGGGTGCGATCG
TCAATTCGCAATTCGAGTTTCCGATCGCGCGGATCACCGTCAATCTGGCGCCGGCCGATTTGCCCAAGGAAGGCGGCCGT
TTCGATCTGGCTATCGCGCTGGGCATTCTGGCGGCGTCCGGCCAAATCCCGAAAACCACGCTTCACGAATACGAATGTAT
CGGCGAACTGGCACTGGGCGGCGAGTTGCGGCCGATACCCGGCGCGCTACCGGTCGCGATTCACTGCCGCAACGCCGCCA
GGCAACTGATTTTGCCGGTGTCCTGCGCCGCCGAAGCCAGTCTGATCCAAGACGCGGCATTGCTGCCTGCCCGCACTTTA
CTGGAAATCTGCGCCCATCTGACCGGCCGGCAAGCCATCGACTCCGCGTCATACGCATTTGGGCTGCCCACGGCCGCATT
CGACATCGATTTTGCCGACGTTCACGGACAATTCCACGTCAAACGCGCGCTGGAAATAGCCGCCGCCGGCGCCCACAATT
TATTGATGTTAGGCCCGCCCGGCACCGGCAAGTCGATGTTGGCGGCACGCTTGCCGACAATTTTGCCGGAACTCAGCGAA
CAGCAAGCGCAGGAAACGGCGGCGATCGCCTCGGTCAGCGACCAGGGTCTGGATGTCGGCCGCTGGCGGCAACCGCCGTT
TCGAGCGCCGCACCATACCGCATCCGCCGCGGCGCTAGTCGGCGGCGGCAGCAACCCCAAGCCTGGCGAAATTTCCCTTG
CCCATCACGGCGCCTTGTTCCTGGACGAATTACCGGAGTTTGATCGCAAGGTGCTGGAAGTCTTACGTGAACCATTGGAA
ACCGGTCATATCACGATTTCCCGCGCGAATCGCCAAGCCGATTTTCCGGCACGGTTTCAGTTGATCGCGGCCATGAACCC
TTGTCCTTGCGGCTACTTGGGCGATTCGTCGGGGCGTTGCCGTTGCACCTCTGAGCAAATCGCGCGCTACCGGGCCAGAG
TATCGGGCCCGCTACTGGACCGAATCGACATGCACTTGGAAGTCCCCAGGGTACCGATCTCGGTGTTGCGCGAGGGCGCA
TCGGCCGGCGAGGAGCGCAGCGAGATCATTCGCGGGCGCGTGGCGGCGGCCCGAAGCATCGCCTATAGCCGTTGCGGCAA
GGCCAATTCGGCATTATCAGCGGCGGAAGTCAAACGCTACTGCACTCTGACGGACGCAGGCCACCGGCTGCTCGAACAAG
CGATGGAAAAGTTCGGACTGTCGCACCGTGCGTATCATCGCATTCTGAAACTGGCCCGCACCATCGCCGACCTGGCCGGT
TCCAATACGATCGAAATTCCGCATCTAAGCGAAGCCATCGGCTATCGAAAGCTGGATAGAACTCGAGGCGGGCCAAACTC
CGGCACATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A177N5Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55

98.232

0.54
  comM Vibrio campbellii strain DS40M4

54.4

98.232

0.534
  comM Glaesserella parasuis strain SC1401

52.673

99.214

0.523
  comM Haemophilus influenzae Rd KW20

52.579

99.018

0.521
  comM Legionella pneumophila str. Paris

51.509

97.642

0.503
  comM Legionella pneumophila strain ERS1305867

51.509

97.642

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

99.804

0.45

Multiple sequence alignment