Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFWHB_RS20640 Genome accession   NZ_CP172298
Coordinates   4501859..4503376 (+) Length   505 a.a.
NCBI ID   WP_395949163.1    Uniprot ID   -
Organism   Aeromonas sp. A-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4496859..4508376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFWHB_RS20625 (ACFWHB_20625) - 4498597..4499541 (-) 945 WP_395949162.1 branched-chain amino acid transaminase -
  ACFWHB_RS20630 (ACFWHB_20630) ilvM 4499554..4499832 (-) 279 WP_106885470.1 acetolactate synthase 2 small subunit -
  ACFWHB_RS20635 (ACFWHB_20635) ilvG 4499829..4501475 (-) 1647 WP_290070706.1 acetolactate synthase 2 catalytic subunit -
  ACFWHB_RS20640 (ACFWHB_20640) comM 4501859..4503376 (+) 1518 WP_395949163.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFWHB_RS20645 (ACFWHB_20645) - 4503498..4504397 (+) 900 WP_139744746.1 acyltransferase -
  ACFWHB_RS20650 (ACFWHB_20650) - 4504407..4505354 (+) 948 WP_395949164.1 acyltransferase -
  ACFWHB_RS20655 (ACFWHB_20655) - 4505297..4505782 (-) 486 WP_395949165.1 DUF523 domain-containing protein -
  ACFWHB_RS20660 (ACFWHB_20660) - 4505779..4506429 (-) 651 WP_111910828.1 NrtR DNA-binding winged helix domain-containing protein -
  ACFWHB_RS20665 (ACFWHB_20665) - 4506504..4507139 (+) 636 WP_106885463.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54672.60 Da        Isoelectric Point: 7.7045

>NTDB_id=1066119 ACFWHB_RS20640 WP_395949163.1 4501859..4503376(+) (comM) [Aeromonas sp. A-8]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPATYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTHTLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARARMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1066119 ACFWHB_RS20640 WP_395949163.1 4501859..4503376(+) (comM) [Aeromonas sp. A-8]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCGCCGCAAGTCACGGTGGAAGTCCATTTATCCAA
CGGGCTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTCGAGTTCCCCTCCAAGCACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAACATACCTGCTCGATCATGAATTTTT
AGGGGAGCTTGCCTTGACCGGCGAGATCCGTCCCGTGCTCGGGGTACTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGTC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCCGAGGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAGTACGAACTGCCGCTGCCGGAGCCCCAGACCACGCACACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TATTCATAGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCGCCGCTCAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCTGGCCACTGGCATCACAGGCCCTATCG
CACGCCCCACCACAGCGCCTCGGCGGTGGCCCTGGTGGGAGGTGGCAGTCACCCGCGGCCGGGGGAAATATCCCTGGCCC
ATAACGGCGTACTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGTCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGGGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTGCGCTACCTCGGCAAACTCTCAGGCC
CCTTCCTCGACCGTTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACTGGCAAGGCGGAGCGGGGA
GAGTCTAGCCAGCAGATCCGCGACCGGGTACTGGCGGCGCGGGCACGAATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGCGAGATAGAGGATATTTGCCGACTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATTTTGCGGGTGTCGCGCACCATAGCGGATCTGGCGGGACAGCCCGCCATC
GGCAAGGAGCATCTTATCGAAGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTACGCAGCGGCCAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.406

0.626
  comM Vibrio campbellii strain DS40M4

61.952

99.406

0.616
  comM Haemophilus influenzae Rd KW20

61.265

100

0.614
  comM Glaesserella parasuis strain SC1401

60.158

100

0.604
  comM Legionella pneumophila str. Paris

50.794

99.802

0.507
  comM Legionella pneumophila strain ERS1305867

50.794

99.802

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.465

Multiple sequence alignment