Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHWS1_RS03110 Genome accession   NZ_CP172106
Coordinates   627438..627890 (+) Length   150 a.a.
NCBI ID   WP_012340854.1    Uniprot ID   W0R5B1
Organism   Pasteurella multocida strain 667     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 628426..638046 627438..627890 flank 536


Gene organization within MGE regions


Location: 627438..638046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWS1_RS03110 ssb 627438..627890 (+) 453 WP_012340854.1 single-stranded DNA-binding protein Machinery gene
  ACHWS1_RS03115 - 628197..628385 (+) 189 WP_011200812.1 hypothetical protein -
  ACHWS1_RS03120 - 628492..628728 (+) 237 WP_230294061.1 hypothetical protein -
  ACHWS1_RS03125 - 628728..630038 (+) 1311 WP_011200814.1 ISL3 family transposase -
  ACHWS1_RS03130 tet(H) 630134..631336 (-) 1203 WP_006248867.1 tetracycline efflux MFS transporter Tet(H) -
  ACHWS1_RS03135 tetR(H) 631428..632051 (+) 624 WP_006248868.1 tetracycline resistance transcriptional repressor TetR(H) -
  ACHWS1_RS03140 - 632054..632572 (-) 519 WP_006248869.1 hypothetical protein -
  ACHWS1_RS03145 - 632621..632800 (-) 180 WP_006248870.1 hypothetical protein -
  ACHWS1_RS03150 - 632910..633044 (+) 135 WP_015587091.1 alcohol dehydrogenase catalytic domain-containing protein -
  ACHWS1_RS03155 - 633134..634681 (-) 1548 WP_006248871.1 multicopper oxidase family protein -
  ACHWS1_RS03160 - 634694..635149 (-) 456 WP_005612095.1 DUF411 domain-containing protein -
  ACHWS1_RS03165 - 635331..635747 (-) 417 WP_316244961.1 DUF6803 family protein -
  ACHWS1_RS03170 - 635650..636417 (+) 768 WP_012340839.1 aldo/keto reductase -
  ACHWS1_RS03175 - 636956..637666 (-) 711 WP_006248874.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17204.13 Da        Isoelectric Point: 5.2733

>NTDB_id=1065213 ACHWS1_RS03110 WP_012340854.1 627438..627890(+) (ssb) [Pasteurella multocida strain 667]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1065213 ACHWS1_RS03110 WP_012340854.1 627438..627890(+) (ssb) [Pasteurella multocida strain 667]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0R5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.76
  ssb Vibrio cholerae strain A1552

51.724

100

0.6
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.527
  ssb Neisseria meningitidis MC58

45.087

100

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.818

100

0.373

Multiple sequence alignment