Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACHWS6_RS05850 | Genome accession | NZ_CP172101 |
| Coordinates | 1239263..1239715 (-) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain 10356423/2430 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1222705..1238727 | 1239263..1239715 | flank | 536 |
Gene organization within MGE regions
Location: 1222705..1239715
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHWS6_RS05745 | - | 1222705..1223415 (+) | 711 | WP_006248874.1 | hypothetical protein | - |
| ACHWS6_RS05750 | - | 1223954..1224721 (-) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| ACHWS6_RS05755 | - | 1224672..1225040 (+) | 369 | WP_308700758.1 | DUF6803 family protein | - |
| ACHWS6_RS05760 | - | 1225222..1225677 (+) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| ACHWS6_RS05765 | - | 1225690..1227237 (+) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| ACHWS6_RS05770 | - | 1227327..1227461 (-) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| ACHWS6_RS05775 | - | 1227571..1227750 (+) | 180 | WP_006248870.1 | hypothetical protein | - |
| ACHWS6_RS05780 | - | 1227799..1228317 (+) | 519 | WP_006248869.1 | hypothetical protein | - |
| ACHWS6_RS05785 | tetR(H) | 1228320..1228943 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| ACHWS6_RS05790 | tet(H) | 1229035..1230237 (+) | 1203 | WP_006248867.1 | tetracycline efflux MFS transporter Tet(H) | - |
| ACHWS6_RS05795 | - | 1230624..1231901 (-) | 1278 | WP_011872831.1 | ISL3 family transposase | - |
| ACHWS6_RS05800 | - | 1231914..1232948 (-) | 1035 | WP_021265566.1 | permease | - |
| ACHWS6_RS05805 | - | 1233060..1233374 (+) | 315 | WP_000349485.1 | ArsR/SmtB family transcription factor | - |
| ACHWS6_RS05810 | - | 1233609..1234397 (+) | 789 | WP_031192893.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 | - |
| ACHWS6_RS05815 | - | 1235017..1235232 (+) | 216 | WP_021265564.1 | hypothetical protein | - |
| ACHWS6_RS05820 | - | 1235267..1235470 (+) | 204 | WP_199764664.1 | N-6 DNA methylase | - |
| ACHWS6_RS05825 | - | 1235388..1235675 (-) | 288 | WP_143432442.1 | plasmid fertility inhibition factor family protein | - |
| ACHWS6_RS05830 | tet(H) | 1235817..1237019 (+) | 1203 | Protein_1112 | tetracycline efflux MFS transporter Tet(H) | - |
| ACHWS6_RS05835 | - | 1237115..1238425 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| ACHWS6_RS05840 | - | 1238425..1238607 (-) | 183 | WP_233791173.1 | hypothetical protein | - |
| ACHWS6_RS05845 | - | 1238768..1238956 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| ACHWS6_RS05850 | ssb | 1239263..1239715 (-) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=1065105 ACHWS6_RS05850 WP_012340854.1 1239263..1239715(-) (ssb) [Pasteurella multocida strain 10356423/2430]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=1065105 ACHWS6_RS05850 WP_012340854.1 1239263..1239715(-) (ssb) [Pasteurella multocida strain 10356423/2430]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |