Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ACHWYG_RS00055 Genome accession   NZ_CP172082
Coordinates   10892..11239 (+) Length   115 a.a.
NCBI ID   WP_163467077.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA54827     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5892..16239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS00040 - 7638..9197 (+) 1560 WP_112102889.1 phosphoethanolamine transferase -
  ACHWYG_RS00045 lspA 9267..9782 (+) 516 WP_005655980.1 signal peptidase II -
  ACHWYG_RS00050 ispH 9779..10723 (+) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACHWYG_RS00055 comE1/comEA 10892..11239 (+) 348 WP_163467077.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACHWYG_RS00060 thiB 11486..12484 (+) 999 WP_005647868.1 thiamine ABC transporter substrate binding subunit -
  ACHWYG_RS00065 thiP 12489..14105 (+) 1617 WP_005662922.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  ACHWYG_RS00070 thiQ 14089..14736 (+) 648 WP_005669738.1 thiamine ABC transporter ATP-binding protein -
  ACHWYG_RS00075 bioB 14849..15850 (+) 1002 WP_005655985.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12385.23 Da        Isoelectric Point: 8.0085

>NTDB_id=1065005 ACHWYG_RS00055 WP_163467077.1 10892..11239(+) (comE1/comEA) [Haemophilus influenzae strain GA54827]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQIALAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1065005 ACHWYG_RS00055 WP_163467077.1 10892..11239(+) (comE1/comEA) [Haemophilus influenzae strain GA54827]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTGACAACTCAAGCTGAAGCTCAAATAGCACTAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.574
  comEA Vibrio cholerae C6706

40.909

95.652

0.391
  comEA Vibrio cholerae strain A1552

40.909

95.652

0.391
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment