Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACG1VR_RS21465 | Genome accession | NZ_CP172054 |
| Coordinates | 4484862..4485395 (-) | Length | 177 a.a. |
| NCBI ID | WP_172568572.1 | Uniprot ID | - |
| Organism | Cedecea davisae strain 739Q | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4479862..4490395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG1VR_RS21445 (ACG1VR_21455) | - | 4480612..4482084 (+) | 1473 | WP_395489760.1 | pyridoxal phosphate-dependent decarboxylase family protein | - |
| ACG1VR_RS21450 (ACG1VR_21460) | - | 4482139..4483074 (-) | 936 | WP_395489761.1 | aromatic alcohol reductase | - |
| ACG1VR_RS21455 (ACG1VR_21465) | - | 4483218..4484123 (+) | 906 | WP_395489762.1 | LysR family transcriptional regulator | - |
| ACG1VR_RS21460 (ACG1VR_21470) | - | 4484137..4484742 (-) | 606 | WP_395489763.1 | hypothetical protein | - |
| ACG1VR_RS21465 (ACG1VR_21475) | ssb | 4484862..4485395 (-) | 534 | WP_172568572.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ACG1VR_RS21470 (ACG1VR_21480) | uvrA | 4485627..4488452 (+) | 2826 | WP_395489764.1 | excinuclease ABC subunit UvrA | - |
| ACG1VR_RS21475 (ACG1VR_21485) | - | 4488453..4488806 (-) | 354 | WP_172568573.1 | MmcQ/YjbR family DNA-binding protein | - |
| ACG1VR_RS21480 (ACG1VR_21490) | aphA | 4488949..4489662 (-) | 714 | WP_016517438.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 18802.79 Da Isoelectric Point: 5.2456
>NTDB_id=1064943 ACG1VR_RS21465 WP_172568572.1 4484862..4485395(-) (ssb) [Cedecea davisae strain 739Q]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSA
PAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSA
PAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=1064943 ACG1VR_RS21465 WP_172568572.1 4484862..4485395(-) (ssb) [Cedecea davisae strain 739Q]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
TGGCGCAGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGTGCACCGGCAGGCGGCAACGGCGGCGGCCAGCAGCAGGGCG
GGTGGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGAGCGCA
CCAGCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
TGGCGCAGTTGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGACCGACCAGGCTGGCGTAGAAAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGTGCACCGGCAGGCGGCAACGGCGGCGGCCAGCAGCAGGGCG
GGTGGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGAGCGCA
CCAGCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.763 |
| ssb | Glaesserella parasuis strain SC1401 |
56.989 |
100 |
0.599 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
39.444 |
100 |
0.401 |