Detailed information
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | ACHV18_RS06680 | Genome accession | NZ_CP172051 |
| Coordinates | 1370073..1371458 (-) | Length | 461 a.a. |
| NCBI ID | WP_016504529.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 103220 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1365073..1376458
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHV18_RS06650 (ACHV18_06650) | - | 1365200..1366573 (-) | 1374 | WP_014326297.1 | sodium:alanine symporter family protein | - |
| ACHV18_RS06655 (ACHV18_06655) | - | 1367022..1367291 (-) | 270 | WP_005722568.1 | GNAT family N-acetyltransferase | - |
| ACHV18_RS06660 (ACHV18_06660) | yacG | 1367291..1367494 (-) | 204 | WP_005719879.1 | DNA gyrase inhibitor YacG | - |
| ACHV18_RS06665 (ACHV18_06665) | coaE | 1367505..1368125 (-) | 621 | WP_014326298.1 | dephospho-CoA kinase | - |
| ACHV18_RS06670 (ACHV18_06670) | - | 1368140..1368862 (-) | 723 | WP_014326299.1 | A24 family peptidase | - |
| ACHV18_RS06675 (ACHV18_06675) | - | 1368862..1370073 (-) | 1212 | WP_014326300.1 | type II secretion system F family protein | - |
| ACHV18_RS06680 (ACHV18_06680) | pilB | 1370073..1371458 (-) | 1386 | WP_016504529.1 | GspE/PulE family protein | Machinery gene |
| ACHV18_RS06685 (ACHV18_06685) | pilA | 1371458..1371892 (-) | 435 | WP_005741096.1 | prepilin peptidase-dependent pilin | Machinery gene |
| ACHV18_RS06690 (ACHV18_06690) | ampD | 1372051..1372617 (+) | 567 | WP_014326302.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACHV18_RS06695 (ACHV18_06695) | rppH | 1373203..1373799 (+) | 597 | WP_005722417.1 | RNA pyrophosphohydrolase | - |
| ACHV18_RS06700 (ACHV18_06700) | - | 1373802..1374596 (+) | 795 | WP_014326303.1 | sulfite exporter TauE/SafE family protein | - |
| ACHV18_RS06705 (ACHV18_06705) | lgt | 1374606..1375409 (+) | 804 | WP_005751073.1 | prolipoprotein diacylglyceryl transferase | - |
| ACHV18_RS06710 (ACHV18_06710) | - | 1375415..1376266 (+) | 852 | WP_005751072.1 | thymidylate synthase | - |
Sequence
Protein
Download Length: 461 a.a. Molecular weight: 52173.85 Da Isoelectric Point: 6.5002
>NTDB_id=1064915 ACHV18_RS06680 WP_016504529.1 1370073..1371458(-) (pilB) [Pasteurella multocida strain 103220]
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFAELGM
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIVLTGIIQTQVNTQIGLDFKRLLRT
FLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRRCDCRV
ETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFAELGM
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIVLTGIIQTQVNTQIGLDFKRLLRT
FLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRRCDCRV
ETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE
Nucleotide
Download Length: 1386 bp
>NTDB_id=1064915 ACHV18_RS06680 WP_016504529.1 1370073..1371458(-) (pilB) [Pasteurella multocida strain 103220]
ATGTTTCATGAGAATCCTTTGTGTACTGTTAGCGCAATGACAGGAGAGGTATTTGAAATCCAACAGGCGCTATGGCAAAA
AAATCAGCAACAACAACGTTTTTTATTACGTTATTTTGCCTTGCCTTTACAAGAAGATGAAAAACAGTTGTGGCTTGGTG
TGGATTCGTTAGCGAATTTATCAGCATGTGATGCCTTTTCTTTTTTAACGAATAAACACATTGAGCCTGTTTTATTATCA
ACAAATGAACTGAAACGGGCATTGCAGCAACTTTCCCCACCAAAATTACAGGTGGAAGAAAACATACCCACGGTTTATCA
AGTCGCGCAATTAGATTCTGATTCCGCGACGGATGAACCTTTGATTCAATTACTTGATCAGGTTTTTGAACGTGCATTAC
AGCTACAGGCTTCTGACATTCATTTTGAACCACAACAGCATAGCTTACAAGTGCGTTTTAGAATCGATGGTGTATTACAA
GTCCAGCCTTCCTTTTCAGGGATATTGGCTAATCGCCTGATTTCTCGTCTTAAATTATTAGCAAAATTAGATATTAGTGA
AACACGCTTGCCTCAGGACGGTTGTTTCCAATTTAAAACGACATTTTCTGATACATTAGATTTTCGACTTTCTACGTTGC
CGACGCATTTAGGCGAAAAAGCGGTATTACGTTTGCAGCGAAATAAGCCTATTCATCTCAGTTTTGCTGAGTTGGGGATG
ACCGCAGACCAACAACACAGGTTCCAACACGCGTTAAGTCAACCTCAAGGACTGATTTTAGTAACGGGACCAACAGGGAG
TGGAAAAAGCATTTCGCTTTATAGTGCGCTAGCTTGGCTCAACAGCATAGAAAAGCATATTTTAACAGCAGAAGATCCGA
TTGAAATTGTGTTGACTGGGATAATCCAAACGCAAGTAAATACGCAAATAGGACTGGATTTCAAGCGCTTATTACGCACT
TTTTTACGTCAAGATCCAGACATTATTATGTTAGGGGAAATTCGTGATGAAGAAAGCGCGTTAATCGCATTACGTGCGGC
TCAAACAGGGCATTTAGTCCTCTCTACCTTGCATACGAATGATGCCCCCTCTGCCCTTACTCGCTTACAGCAATTAGGGG
TGCCTTTGCATGAAATTGAACAAAGCCTATTACTTGTTGTGGCGCAGCGTTTATTGCGTCGTCGTTGTGATTGCCGTGTA
GAGACACAATCGGCGTGTCGTTGCTATCAGGGGTATAAAGGGAGGATTGGGGTATATCAATTTTTACAAAAAGATAAAAC
AGGGTGTTTTGTCACGGATTTTAGTAGTTTACGCGAGAGTGCGAAGGAAAAAGTTCGTTTAGGCATGACCGATGACAATG
AAGTACAACGTGTATTAGGTGAATGA
ATGTTTCATGAGAATCCTTTGTGTACTGTTAGCGCAATGACAGGAGAGGTATTTGAAATCCAACAGGCGCTATGGCAAAA
AAATCAGCAACAACAACGTTTTTTATTACGTTATTTTGCCTTGCCTTTACAAGAAGATGAAAAACAGTTGTGGCTTGGTG
TGGATTCGTTAGCGAATTTATCAGCATGTGATGCCTTTTCTTTTTTAACGAATAAACACATTGAGCCTGTTTTATTATCA
ACAAATGAACTGAAACGGGCATTGCAGCAACTTTCCCCACCAAAATTACAGGTGGAAGAAAACATACCCACGGTTTATCA
AGTCGCGCAATTAGATTCTGATTCCGCGACGGATGAACCTTTGATTCAATTACTTGATCAGGTTTTTGAACGTGCATTAC
AGCTACAGGCTTCTGACATTCATTTTGAACCACAACAGCATAGCTTACAAGTGCGTTTTAGAATCGATGGTGTATTACAA
GTCCAGCCTTCCTTTTCAGGGATATTGGCTAATCGCCTGATTTCTCGTCTTAAATTATTAGCAAAATTAGATATTAGTGA
AACACGCTTGCCTCAGGACGGTTGTTTCCAATTTAAAACGACATTTTCTGATACATTAGATTTTCGACTTTCTACGTTGC
CGACGCATTTAGGCGAAAAAGCGGTATTACGTTTGCAGCGAAATAAGCCTATTCATCTCAGTTTTGCTGAGTTGGGGATG
ACCGCAGACCAACAACACAGGTTCCAACACGCGTTAAGTCAACCTCAAGGACTGATTTTAGTAACGGGACCAACAGGGAG
TGGAAAAAGCATTTCGCTTTATAGTGCGCTAGCTTGGCTCAACAGCATAGAAAAGCATATTTTAACAGCAGAAGATCCGA
TTGAAATTGTGTTGACTGGGATAATCCAAACGCAAGTAAATACGCAAATAGGACTGGATTTCAAGCGCTTATTACGCACT
TTTTTACGTCAAGATCCAGACATTATTATGTTAGGGGAAATTCGTGATGAAGAAAGCGCGTTAATCGCATTACGTGCGGC
TCAAACAGGGCATTTAGTCCTCTCTACCTTGCATACGAATGATGCCCCCTCTGCCCTTACTCGCTTACAGCAATTAGGGG
TGCCTTTGCATGAAATTGAACAAAGCCTATTACTTGTTGTGGCGCAGCGTTTATTGCGTCGTCGTTGTGATTGCCGTGTA
GAGACACAATCGGCGTGTCGTTGCTATCAGGGGTATAAAGGGAGGATTGGGGTATATCAATTTTTACAAAAAGATAAAAC
AGGGTGTTTTGTCACGGATTTTAGTAGTTTACGCGAGAGTGCGAAGGAAAAAGTTCGTTTAGGCATGACCGATGACAATG
AAGTACAACGTGTATTAGGTGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Haemophilus influenzae 86-028NP |
68.212 |
98.265 |
0.67 |
| pilB | Haemophilus influenzae Rd KW20 |
67.55 |
98.265 |
0.664 |
| pilB | Glaesserella parasuis strain SC1401 |
58.811 |
98.482 |
0.579 |
| pilB | Acinetobacter baumannii D1279779 |
39.757 |
100 |
0.425 |
| pilB | Vibrio campbellii strain DS40M4 |
39.419 |
100 |
0.412 |
| pilB | Acinetobacter baylyi ADP1 |
37.876 |
100 |
0.41 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
39.293 |
100 |
0.41 |
| pilB | Vibrio cholerae strain A1552 |
38.272 |
100 |
0.403 |
| pilB | Legionella pneumophila strain ERS1305867 |
37.219 |
100 |
0.395 |