Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHMXE_RS42315 Genome accession   NZ_CP172004
Coordinates   6270988..6272526 (+) Length   512 a.a.
NCBI ID   WP_395349407.1    Uniprot ID   -
Organism   Variovorax sp. UC122_21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6265988..6277526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXE_RS42295 (ACHMXE_42295) - 6266832..6267761 (-) 930 WP_395349406.1 SMP-30/gluconolactonase/LRE family protein -
  ACHMXE_RS42300 (ACHMXE_42300) - 6268035..6269462 (-) 1428 WP_203203701.1 ammonium transporter -
  ACHMXE_RS42305 (ACHMXE_42305) glnK 6269492..6269830 (-) 339 WP_057597341.1 P-II family nitrogen regulator -
  ACHMXE_RS42310 (ACHMXE_42310) - 6269895..6270773 (-) 879 WP_203203700.1 TorF family putative porin -
  ACHMXE_RS42315 (ACHMXE_42315) comM 6270988..6272526 (+) 1539 WP_395349407.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHMXE_RS42320 (ACHMXE_42320) - 6272615..6274624 (-) 2010 WP_395349408.1 serine/threonine-protein kinase -
  ACHMXE_RS42325 (ACHMXE_42325) tagF 6274653..6275369 (-) 717 WP_296774512.1 type VI secretion system-associated protein TagF -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54131.83 Da        Isoelectric Point: 8.5449

>NTDB_id=1064779 ACHMXE_RS42315 WP_395349407.1 6270988..6272526(+) (comM) [Variovorax sp. UC122_21]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPMALGILAASGQIEGARLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPATSADEAALVPGAEVHGA
RHLLDVVRRFLPADAQADQDADDDGWSRARASAPAGAPAYADMADVKGHAGAKRALEIAAAGGHSLLMMGEPGSGKSMLG
QRFAGLLPPMRIDEALESAAIASLGGRFSTERWMHRPTASPHHTSSAVALVGGGSPPRPGEISMAHHGVLFLDEFPEFSR
AALEALREPLETGTITIARAARRADFPARFQLVAAMNPCPCGFLGAPAKACRCTPDQVARYQRKLSGPLLDRIDLHIEVP
AISAQQLLDAPAGEPTAAIRTRVIAARERAIERQGRPNQALQGADIDRHASLGDEARRFMHTAAARLGWSARSTHRALKV
ARTIADLAGSQVIETAHVAEAVQYRRALQKGL

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=1064779 ACHMXE_RS42315 WP_395349407.1 6270988..6272526(+) (comM) [Variovorax sp. UC122_21]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGGCTTGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCACGCTGGTCGGGCTCGCCGAAACCGAGGTCAAGGAAGCGCGCGAGCGCGTGCGTTCGGCCATCC
AGAACGCCGGGCTGGAGTTCCCGCACAACAAGCGCATCACCGTGAACCTCGCGCCGGCCGACCTGCCCAAGGACTCGGGC
CGCTTCGACCTGCCGATGGCGCTGGGCATCCTTGCGGCCAGCGGCCAGATCGAGGGCGCGCGGCTCGCGGGGCACGAATT
CGCGGGCGAGCTCTCGCTGTCGGGCGAGCTGCGGCCGGTGCGCGGCGCGCTCGCGATGGCGCTCGCGCTGCACACGCGCG
GCATCGCCACCCGGCTGGTGCTGCCCGCGACCAGCGCCGACGAGGCCGCGCTGGTGCCCGGCGCCGAGGTCCATGGCGCC
AGGCATCTGCTCGACGTGGTGCGGCGCTTCCTGCCGGCCGATGCGCAGGCCGACCAGGACGCGGACGACGACGGCTGGTC
GCGCGCCCGGGCGTCGGCGCCAGCCGGCGCCCCGGCCTATGCCGACATGGCCGACGTGAAGGGCCATGCCGGCGCCAAGC
GCGCGCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTCCTGATGATGGGCGAGCCGGGCTCGGGCAAGTCGATGCTGGGC
CAGCGCTTCGCCGGCCTGCTGCCGCCGATGCGCATCGACGAGGCGCTCGAGAGCGCGGCCATCGCGAGCCTGGGCGGGCG
CTTCTCGACCGAGCGCTGGATGCACCGGCCGACCGCGTCGCCGCACCACACCTCGAGCGCGGTGGCGCTGGTCGGCGGTG
GCTCGCCGCCGCGGCCCGGCGAGATCTCGATGGCGCACCACGGCGTGCTGTTCCTCGACGAGTTCCCCGAGTTTTCGCGC
GCCGCGCTCGAGGCGCTGCGCGAACCGCTCGAGACCGGCACCATCACCATCGCGCGGGCCGCGCGGCGGGCGGATTTTCC
GGCGCGCTTTCAACTCGTGGCCGCCATGAATCCATGCCCCTGCGGCTTTTTGGGCGCCCCCGCGAAGGCCTGCCGCTGCA
CGCCCGACCAGGTGGCGCGCTACCAGCGCAAGCTCAGCGGCCCCCTGCTCGATCGCATCGACCTGCACATCGAAGTGCCC
GCAATCTCGGCGCAACAGCTGCTCGACGCGCCCGCGGGCGAACCCACCGCCGCCATCCGCACGCGCGTGATCGCCGCGCG
CGAACGCGCGATCGAGCGCCAGGGCCGGCCCAACCAGGCGTTGCAGGGCGCCGACATCGACCGCCATGCGTCGCTCGGCG
ACGAGGCGCGCCGCTTCATGCACACGGCCGCCGCCCGGCTCGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAGGTG
GCGCGCACCATCGCCGACCTCGCGGGGTCACAGGTCATCGAGACCGCGCATGTGGCGGAGGCGGTGCAGTACCGGCGGGC
ACTGCAGAAGGGCCTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.373

99.609

0.512
  comM Glaesserella parasuis strain SC1401

48.369

100

0.492
  comM Haemophilus influenzae Rd KW20

48.932

100

0.492
  comM Vibrio campbellii strain DS40M4

49.31

99.023

0.488
  comM Legionella pneumophila str. Paris

47.461

100

0.475
  comM Legionella pneumophila strain ERS1305867

47.461

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.436

99.414

0.422

Multiple sequence alignment