Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHMXE_RS14185 Genome accession   NZ_CP172004
Coordinates   409934..410476 (+) Length   180 a.a.
NCBI ID   WP_209542910.1    Uniprot ID   -
Organism   Variovorax sp. UC122_21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 404934..415476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXE_RS14175 (ACHMXE_14190) uvrA 405285..408380 (-) 3096 WP_395349815.1 excinuclease ABC subunit UvrA -
  ACHMXE_RS14180 (ACHMXE_14195) - 408428..409795 (-) 1368 WP_395349816.1 chloride channel protein -
  ACHMXE_RS14185 (ACHMXE_14200) ssb 409934..410476 (+) 543 WP_209542910.1 single-stranded DNA-binding protein Machinery gene
  ACHMXE_RS14190 (ACHMXE_14205) - 411014..412063 (+) 1050 WP_281080938.1 ThuA domain-containing protein -
  ACHMXE_RS14195 (ACHMXE_14210) - 412189..414405 (+) 2217 WP_203203115.1 PQQ-binding-like beta-propeller repeat protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19039.04 Da        Isoelectric Point: 6.9830

>NTDB_id=1064766 ACHMXE_RS14185 WP_209542910.1 409934..410476(+) (ssb) [Variovorax sp. UC122_21]
MASVNKVILVGNLGRDPETRTFPSGDQVCNATLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGAPAGGGYDDGGYSQGGNGGGGGGGGYAPAPARAPAAAPRAPAPAP
RQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1064766 ACHMXE_RS14185 WP_209542910.1 409934..410476(+) (ssb) [Variovorax sp. UC122_21]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGCCGCGATCCCGAAACCCGTACCTTCCCGAGCGGCGACCA
GGTCTGCAACGCGACCCTCGCGACCACCGACAAGTGGAAGGACAAGCAAAGCGGCGAGATGCGCGAAGCCACCGAATGGC
ACCGTCTCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAAGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCGACCGACATCCGCGTCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGCCCCGGCGGGCGGCGGCTACGACGACGGCGGTTATTCGCAGGGCGGCAATGGCG
GTGGCGGTGGTGGCGGCGGCTACGCCCCGGCACCGGCGCGCGCCCCGGCCGCCGCGCCGCGCGCACCGGCGCCCGCACCG
CGCCAGGCACCGGCCAAGTCCTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.938

100

0.517
  ssb Vibrio cholerae strain A1552

46.524

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461
  ssb Neisseria meningitidis MC58

44.382

98.889

0.439

Multiple sequence alignment