Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHMW6_RS35610 Genome accession   NZ_CP171977
Coordinates   7176579..7177085 (+) Length   168 a.a.
NCBI ID   WP_395404395.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7171579..7182085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMW6_RS35595 (ACHMW6_35585) - 7172081..7172695 (+) 615 WP_395404389.1 TetR/AcrR family transcriptional regulator -
  ACHMW6_RS35600 (ACHMW6_35590) - 7172896..7173501 (+) 606 WP_395404391.1 2-hydroxychromene-2-carboxylate isomerase -
  ACHMW6_RS35605 (ACHMW6_35595) uvrA 7173569..7176418 (-) 2850 WP_395404393.1 excinuclease ABC subunit UvrA -
  ACHMW6_RS35610 (ACHMW6_35600) ssb 7176579..7177085 (+) 507 WP_395404395.1 single-stranded DNA-binding protein Machinery gene
  ACHMW6_RS35615 (ACHMW6_35605) - 7177376..7178863 (+) 1488 WP_395404397.1 PKD domain-containing protein -
  ACHMW6_RS35620 (ACHMW6_35610) - 7179515..7180759 (+) 1245 WP_395404399.1 IS110 family transposase -
  ACHMW6_RS35625 (ACHMW6_35615) - 7180868..7182064 (+) 1197 WP_395404401.1 IS256 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18174.46 Da        Isoelectric Point: 5.9417

>NTDB_id=1064705 ACHMW6_RS35610 WP_395404395.1 7176579..7177085(+) (ssb) [Pseudoduganella sp. UC29_106]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYRSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRQGMGGDAGMGGDDMGGYDAPPSRPAPRPQAAPAPAPAPRPAARPAPNFS
DMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1064705 ACHMW6_RS35610 WP_395404395.1 7176579..7177085(+) (ssb) [Pseudoduganella sp. UC29_106]
ATGGCATCTGTTAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCGGAGATTCGCTACATGCCAAGCGGTGATGC
AATCGCCAACATTGCTGTTGCAACCTCGTACCGCAGCAAAGACCGCAACACCGGCGAGCAGAAAGAGCTGACCGAGTGGC
ACCGCATTTCCTTCTTCGGCCGCCTGGCCGAGATCGTTGGGCAGTACCTGAAGAAAGGTTCCTCCGTCTACGTCGAAGGC
CGCCTGCAGACCCGCAAGTACACGGACAAGGACGGCGTCGAGAAATACGCAACCGACATCATCGCCGAGCAGATGCAAAT
GCTGGGTGGCCGCCAGGGCATGGGCGGTGACGCCGGCATGGGCGGCGACGACATGGGCGGCTACGACGCGCCTCCATCCC
GTCCAGCCCCGCGCCCACAGGCAGCTCCGGCTCCGGCTCCGGCCCCCCGCCCAGCCGCCCGCCCAGCGCCGAACTTCTCG
GATATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

52.809

100

0.56
  ssb Neisseria meningitidis MC58

52.542

100

0.554
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.53
  ssb Vibrio cholerae strain A1552

50.282

100

0.53

Multiple sequence alignment